... file . ... annotate . file log . ... lib::project::muscle_align project::save_fasta sequence::operator== fixes test -- alignment done . ... BurkovBA@0 . ... 9 class Block ( object ): . ... 12 * self.project -- project object, which the block belongs to . ... 13 * self.sequences - set of sequence objects that contain monomers . ... 22 >>> block1 = block.Block(proj, proj.sequences, range(len(proj.alignment[proj.sequences[0]]))) . ... 26 def __init__ ( self , project , sequences , positions ): . ...

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... annotate . ... ksenia_yashina@23 . ... 2 <title> Petri dish </title> . ... 7 Simulation of life inside Petri dish, where hypothetic unicellular organisms move and reproduce. ksenia_yashina@23 . ... 13 <li> Asexual reproduction - division of parent cell, which leads to formation of two identical daughter cells; parent cell disappears; no division occurs if there is not enough space to place daughter cells in dish </li> . ... 24 Number of cells [1-10] - number of cells in dish at start of simulation ....

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A.N. Belozersky Institute . Bioinformatics Portal . ... Russian EMBnet Node . ... AliBee - Multiple alignment Release 2.0 . ... Grants information . ... Our Institute is a scientific department of Moscow State University. ... Address: Belozersky Institute,Moscow State University,Leninskie Gory 1,Bldg. ... Information about our activities and EMBnet resources around the World is available here . Information about our educational activities with kids, children and teenagers is available here . ...

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... Criteria of branch quality . As it was repeatedly told , phylogenetic trees consist from branches. ... I. e., those positions, which can separate sequences of the branch from other sequences in the alignment. ... Measure of branch separation . ... Here and further: A - branch of the tree, i , j - sequences of alignment . ... That's why number of conserved positions in some branch should be considered in complex with the distribution of conserved positions in the whole alignment. ...

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You are here: Foswiki > System Web > HierarchicalNavigation (23 Aug 2010, ProjectContributor ) E dit A ttach . Navigation block that displays the current topic, its parent and children (if any). ... children . ... STARTSECTION{ all }% div class = foswikiHierarchicalNavigation ul %SEARCH{ parent type= query topic = %BASETOPIC% web = %BASEWEB% nonoise= on format= li class ='foswikiParentTopic' $percentICON{ parent _gray}$percent [[$ web .$ parent ][$ parent ]] /li }% li ...

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Hide Zen home . ... Lets suppose we model our tree data like this: CREATE TABLE tree( id integer PRIMARY KEY, name text not null, parents integer[] ) We then create an index on the parents column: CREATE INDEX tree_parents on tree using gist (parents gist__int_ops); Now we can do quite interesting things with our tree: Lets insert the root: INSERT INTO tree (id,name,parents) VALUES (1,'root',null); The root does not a have any parents. ... To find the root we access parents[n]. ... Zen, 2003-2007 ...

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The files containing information about Affymetrix microarrays were downloaded from the official Affymetrix site. ... Probe sequences were mapped to the genome using Blat. ... The hits found "probe alignment regions" were . ... We annotated each probe alignment region using the mRNA and EST alignments provided by UCSC, considering only . ... The textual part of the interface consists of probe information section, probe alignment section and transcription state . ... Each gene and each probe alignment . ...

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FAMILY PROJECTS IN THE KINDERGARTEN Petrova Ju.V., Vladimirova T.V., Potapova T.V. 1 State educational institution kindergarten of combined type 1820 119192 Russia, Moscow, 11-1 Vinnitskata str. ... Doing homework from the "Nadezhda" program teach the kindergarteners and their parents to search for the information sources and work with them. Considering the visual-active thinking of the preschool children, in the family research projects we pay special attention to the basic search activities. ...

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NGS Data Analysis with Unipro UGENE Olga Golosova, Yuriy Vaskin, German Grekhov, Yuliya Algaer UNIPRO, Lavrentieva ave. ... That is where Unipro UGENE NGS framework comes in play. ... Moreover, the UGENE toolkit allows one to automate common tasks by creating workflows with the integrated tools using the UGENE Workflow Designer. Analysis of NGS data with UGENE may start, for example, from quality control of raw NGS data, received from a sequencing facility, with the integrated FastQC [3] tool. ...

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