... 6 import sequence . ... 19 * self.alignment -- alignment object, which the block belongs to . ... 22 * self.positions -- list of positions of the alignment.body that . ... 25 Don't change self.sequences -- it may be a link to other block.sequences . ... 34 def __init__ ( self , alignment , sequences = None , positions = None ): . ... 75 If more than one pdb chain for some sequence provided, consider all of them . ... 129 alignment_sequence = self . ... 136 def sequences_chains ( self ): . ...

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• allpy: 8d4be3c2a286 allpy/block.py
• allpy: 72db5aa461c0 allpy/block.py
• allpy: 85db5a070096 allpy/block.py

... 2011/12/09 . ... added alignment merging . added parameter corresponding to the width of output alignment . fixed homologue searching for very long query sequences . ... Copyright 2010-2011 Yury Pekov ...

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... Block DNA GyrB" shows the score of pairs Lys|Lys, Lys|Arg and Lys|Ser respectively, from a block constituted by amino acid sequences from the same protein (DNAGyraseB), but from different organisms, for example GYRB_ECOLI, GYRB_YERPE (yeast), GYRB_HEINE, GYRB_MUSC (mouse). Block 200 illustrates the score of these pairs from 200 different blocks constituted by sequences from differnet organisms. ... Between the values of single BLock the differences are smaller than between the values of Blosum62. ...

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• http://kodomo.cmm.msu.su/~dendik/data/python/2012-04-28/allpy.pdf

Given word length and max number of mismatches . Use MEME algorithm for define conserved blocks . Apply the Dynamic programming algorithm to create chain of the blocks . Refine the chain using combined profile for chain of blocks. ... Reduce word length and number of mismatches and repeat the procedure for spacer between the blocks. ... Create helix profile and apply MEME-like iterative procedure to find sets of helices that consistent lokated reative to conserved blocks . ...

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• Site Cluster

A program for automatic detection of aligned blocks in multiple protein alignment. Paste your alignment in fasta-format here: . ... The program works slow - it takes 8 seconds to process alignment of 6 sequences of length 500. The program's development is supported by Russian Foundation for Basic Research (grant 10-07-00685-a) and Ministry of Education and Science of the Russian Federation (State Contract No. 07.514.11.4006). ...

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• SVETKA, a program for multiple sequence alignments analysis
• Geometrical core

AliGraf - GeneBee Graphical Alignment Help Type in a title for this session for you to remember. ... Type in an alignment algorith name (Genebee, ClustalW, Manual.. ... Even - all column space are colored; Sparse - every column is colored with respect to the column weight: less weight more space is left uncolored; Very sparse - more space is left uncolored. ... Also you can get a picture when only selected groups are colored. ... Group set depends on selected group type. ...

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• TreeTop - Phylogenetic Tree prediction
• AliComp - GeneBee Alignment Comparison Help
• Multiple alignment

S .. ... a database of structures of DNA-protein and RNA-protein complexes. ... a program for finding hydrophobic clusters in 3D structures of macromolecules . ... search of conserved hydrophobic clusters in aligned 3D structures of protein families . ... a program for analysis of multiple alignments . ... a program for automatic detection of aligned blocks in a multiple protein alignment. ... a program for detection of aligned blocks in a multiple alignment of sequences of PDB chains. ...

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• Inquiry information || Formats of alignments
• About authors ot this complex
• SVETKA, a program for multiple sequence alignments analysus

NPG-explorer : a new tool for nucleotide pangenome construction and closely related prokaryotic genomes analysis Boris Nagaev2, Maxim Nikolaev2, Andrei Alexeevski 1 1,2,3* A.N.Belozersky Institute Of Physico-Chemical Biology and 2Faculty ... @gmail.com Moscow State University, Moscow 119991, Russia 3Scientific Research Institute of System Analysis (NIISI RAS), Moscow Genomes of closely related bacteria have highly similar sequences of orthologous ... Blocks are classified into four categories. ...

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• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/164.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/237.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/28.pdf

Items Added in November/December, 2000: . ... 2000/12/05] . MathPlanner -- a mathematical design tool.[ ... Open Image Library -- cross-platform image library to manipulate and display a variety of images.[ ... AniTMT -- a flexible application to create photorealistic films.[ ... mmcalc -- a console-based, modular scientific calculator.[ ... Linux for Biotechnology -- Biotechnology related software pre-compiled for Linux.[ ... SAL Home | New Items Page | ...

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• SAL -- Scientific Applications on Linux -- New Items Added in 2001/05 and
• SAL -- Scientific Applications on Linux -- New Items Added in 1997/10
• SAL -- Scientific Applications on Linux -- New Items Added in 1998/09 and

Электронная библиотека Попечительского совета . ... Block L.S., Coppel W.A. - Dynamics in One Dimension . ... Название: Dynamics in One Dimension . Авторы: Block L.S., Coppel W.A. Аннотация: . ... Degree, one lift 232 . ... Symbolic dynamics 34 . ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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• Beckenbach E.F. (ed.) - Applied Combinatorial Mathematics :: Электронная
• Brown S.M. - Bioinformatics: A Biologist's Guide to Biocomputing and the

... About lab . ... MSU Graphics & Media Lab (Video Group) . The filter is intended for recovering visual quality of video ripped from DVD (for example, when it contains 4 hours of video data), VideoCD or after decompressing by H.261, H.263, H.264, DivX, XviD, etc. The algorithm decreases blocking artifacts, significantly improving visual quality of video. Filter automatically determines the blockiness's strength on the frame and in the certain part of it, preserving the maximum of details. ...

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• Removing of blocking effect from video | Лаборатория компьютерной графики и
• Smart removal of blocking effects from video | Graphics and Media Lab
• Smart removal of blocking effects from video | Лаборатория компьютерной графики

... Derived datatypes . Up: Point-to-Point Communication Next: Datatype constructors Previous: Null processes . ... Instead, MPI provides mechanisms to specify more general, mixed, and noncontiguous communication buffers. ... More general communication buffers are specified by replacing the basic datatypes that have been used so far with derived datatypes that are constructed from basic datatypes using the constructors described in this section. ... A sequence of basic datatypes . ... Центры . ...

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• Progress | PARALLEL.RU - Информационно-аналитический центр по параллельным
• Minor Corrections | PARALLEL.RU - Информационно-аналитический центр по
• Blocking send | PARALLEL.RU - Информационно-аналитический центр по параллельным

Welcome , Registration , and other StartingPoints ; TWiki history & Wiki style; All the docs.. ... TWikiRenderDotPm 4 - 2007-03-03 - Main.TWikiContributor . Line: 128 to 128 . ... Return value: $text with blocks added back . text - reference to text to process . map - map placeholders to blocks removed by takeOutBlocks . Added: . ... Copyright by the contributing authors. ... Note: Please contribute updates to this topic on TWiki.org at TWiki:TWiki.TWikiRenderDotPm . ...

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• %TOPICTITLE% (25 vs. 26) - TWiki
• %TOPICTITLE% (41 vs. 42) - TWiki
• %TOPICTITLE% (1 vs. 2) - TWiki

. As your body grows bigger . Your mind grows flowered . It's great to learn . >Cause knowledge is power!< . It's Schoolhouse Rocky . That chip off the block . Of your favourite schoolhouse . Schoolhouse Rock! . Back to main Schoolhouse Rock menu...

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• Adding Variables to CONFIG.SYS
• Program units
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... Астронет | ... планета Астронет | ... Сверхновые . Яркая сверхновая в M82 . ... 1999 2000 2001 2002 . ... NASA Web Site Statements, Warnings, and Disclaimers . NASA Official: Jay Norris. ... Публикации с ключевыми словами: starburst galaxy - star formation - supernova - взрывы сверхновых - сверхновые типа Ia . Публикации со словами: starburst galaxy - star formation - supernova - взрывы сверхновых - сверхновые типа Ia . ... NGC 6188 и NGC 6164 . ... NGC 1999: к югу от Ориона . ...

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• Bakasa Eclipse Sequence
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... Inherits QObject . ... Example: #include <qsignal.h> class MyClass { public: MyClass(); ~MyClass(); void doSomething(); void connect( QObject *receiver, const char *member ); private: QSignal *sig; }; MyClass::MyClass() { sig = new QSignal ; } MyClass::~MyClass() { delete sig; } void MyClass::doSomething() { // ... does something sig-> activate (); // activates the signal } void MyClass::connect( QObject *receiver, const char *member ) { sig-> connect ( receiver, member ); } . ... Emits the signal. ...

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• Qt Toolkit - QBoxLayout Class
• Qt Shared Classes

... Changelog: GENERAL: - kernel 2.6.32.10 / LTS kernel 2.6.27.45 - pacman 3.3.3 usage - RAM recommendations: 288 MB Kernel changes : Removed features: Environment changes : - nilfs2 filesystem tools added - btrfs filesystem tools added - gdisk added hwdetect changes : setup changes : - a lot of internal function cleanup - better menu switching - better dialogs - support virtio block devices - ... Hybrid image file is a standard CD-burnable image and also a raw disk image. ...

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• http://mirror.msu.net/pub/rfc-editor/rfc-ed-all/pdfrfc/rfc6776.txt.pdf
• http://mirror.msu.net/pub/archlinux/iso/archboot/history/Changelog-2010.04-1.txt
• http://mirror.msu.net/pub/rfc-editor/rfc-ed-all/rfc6776.txt

... The other approach is to somehow permit the conditional inclusion of architecture- or operating system-specific sections of the spec file. ... The %ifarch conditional is used to begin a section of the spec file that is architecture-specific. ... If a spec file contains a conditional block starting with %ifarch alpha , that block would be processed only if the build was being done on a Digital Alpha/AXP-based system. ... A %endif is used to end a conditional block of spec file statements. ...

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• Установка на Linux на RAID
• Adding Dependency Information to a Package
• Adding PGP Signatures to a Package

The global preference setting WYSIWYG_EXCLUDE can be set to make the plugin sensitive to what is in a topic, before allowing it to be edited. ... html - HTML tags (e.g. <div> , not including <br>), or . ... For example, setting it to table=background,lang;tr=valign will stop the translator from trying to convert any table tag that has background or lang attributes, and any tr tag that has a valign attribute back to Foswiki | ... This topic: System > Plugins > WysiwygPlugin > WysiwygPluginSettings . ...

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• JQueryBlockUI < System < Foswiki

An evolutionary algorithm of feature accumulation for the construction of neural networks" . ... A description of a new algorithm for the automatic neural network construction technique that involves positive features of the evolutionary and constructive approaches is presented. The main idea of the algorithm is based on the following: at each step, a neural network is increased by adding blocks of new neurons having a maximal influence on the error reduction. ... PDF (in Russian) (1.04MB) . ...

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• A stochastic modification of the spherical block-and-fault model of lithosphere
• Topic models: adding bigrams and taking account of the similarity between
• Analysis of resonant excitation of layered and block media on the basis of