... diff . ... Implemented & tested new markup API. ... line diff . 1.1 --- a/ allpy / base.py Fri Jul 15 13:57:56 2011 +0400 1.2 +++ b/ allpy / base.py Fri Jul 15 16:43:03 2011 +0400 1.3 @@ -101,7 +101,43 @@ 1.4 def __ne__( self , other): 1.5 return not ( self == other) 1.6 1.7 -class Sequence (list): 1.8 +class MarkupContainerMixin(object): 1.9 + Common functions for alignment and sequence for dealing with markups. 1.10 + 1.11 + 1.12 + def _ init ( ...

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• allpy: 3d40d7b9a123 lib/project.py
• allpy: 0905a39738f2 lib/project.py
• allpy: 9b91b49b9ef0 lib/project.py

The files containing information about Affymetrix microarrays were downloaded from the official Affymetrix site. ... Probe sequences were mapped to the genome using Blat. ... The hits found "probe alignment regions" were . ... We annotated each probe alignment region using the mRNA and EST alignments provided by UCSC, considering only . ... The textual part of the interface consists of probe information section, probe alignment section and transcription state . ... Each gene and each probe alignment . ...

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... This API (Application Programming Interface) document has pages corresponding to the items in the navigation bar, described as follows. The Overview page is the front page of this API document and provides a list of all packages with a summary for each. ... Each package has a page that contains a list of its classes and interfaces, with a summary for each. ... Each of these pages has three sections consisting of a class/interface description, summary tables, and detailed member descriptions: . ...

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• API Help
• : Package ucar.netcdf
• BarChart

... 1) Our CAS system will store the catalogues. ... Each catalogue should contain one or more tables. 2) The names of the catalogues should be unique, as well as the the names of tables of the SAME catalogue. ... 4) All the metadata about the CAS system, its tables, catalogues should reside in separate schema (currently "cas_metadata"). 1) The main system table of CAS is the table "catalog_list". ... short info (column "info") . ... 2) The second system table of CAS is the table "table_list". ...

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... A regular expression (regex) is a powerful way of specifying a complex search. MySQL uses regular Henry Spencer's inplementation of regular expressions. ... MySQL uses the extended version. This is a simplistic reference that skips the details. To get more exact information, see Henry Spencer's regex(7) manual page that is included in the source distribution. ... A regular expression describes a set of strings. The simplest regexp is one that has no special characters in it. ...

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• Lists in HTML documents
• Changes between HTML 3.2 and HTML 4.0
• MySQL Reference Manual for version 3.23.10-alpha. - 11 The MySQL benchmark...

... Parsimony method . ... It is based on the following principle: the ancestral sequences (posed in nodes of a phylogenetic tree) should be such that the minimal required number of character replacements on the branches of the tree is less than for any other choice of sequences. ... If the preliminary character of the node is * , but the output character of its immediate ancestor is some letter (say, X ), and its set of possible characters contains X , then the output character of the node is also X . ...

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• About this project
• Inquiry information || Distances
• SDP home page

... О UNИX . ... Неизменяемая страница . ... Processing Instructions . ... redirect . ... pragma . ... deprecated . ... MoinMoin processing instructions have the same semantics as in XML: they control the paths taken when processing a page. ... For more information on the possible markup, see HelpOnEditing . Processing instructions MoinMoin knows of: . ... Redirect to a different page (see PageRedirect ) #REDIRECT pagename . ... Sets processing modes for this page: #PRAGMA mode arguments . ...

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• DCOUNTA
• DCOUNT
• DSTDEV

... О UNИX . ... Неизменяемая страница . ... Processing Instructions . ... redirect . ... pragma . ... deprecated . ... MoinMoin processing instructions have the same semantics as in XML: they control the paths taken when processing a page. ... For more information on the possible markup, see HelpOnEditing . Processing instructions MoinMoin knows of: . ... Redirect to a different page (see PageRedirect ) #REDIRECT pagename . ... Sets processing modes for this page: #PRAGMA mode arguments . ...

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This diagram shows the relationship between a table and a caption to its left and how they behave in the visual formatting model. The diagram shows a table with 3 columns, one row of headers, and six rows of data cells. The table is centered within its containing block, whose left and right edges are depicted by vertical lines and labeled "current margins". ... To the left of the left containing block edge, a right-justified paragraph of five lines is aligned with the bottom of the table. ...

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• Long description of example illustrating table row height calculations and
• Long description of example illustrating rows separated by a border
• Long description for example showing how structurally overlapping cells are

... Note that if the contents contains block elements such as div , mode should be div as well to create valid HTML markup. optional, defaults to <div> . ... hide" . ... Class for link . ... Image url . ... Alternatively use an image attached to the topic. optional, defaults to no image . ... Specify the url of an image that will be displayed with the hide link at the left side of the link. ... Specify the url of an image that will be displayed with the hide link at the right side of the link. ... link ...

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... It interpolates the grid at the positions in the table and writes out the table with the interpolated values added as a new column. A bicubic [Default] or bilinear [ -Q ] interpolation is used, requiring boundary conditions at the limits of the region (see -L flag option). xyfile This is an ASCII [or binary, see -b ] file where the first 2 columns hold the (x,y) positions where the user wants to sample the 2-D data set. ... Default is 2 input columns]. -bo Selects binary output. ...

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• http://xray.sai.msu.ru/~ivan/gmt/man/spectrum1d.html
• http://xray.sai.msu.ru/~ivan/gmt/man/xyz2grd.html
• http://xray.sai.msu.ru/~ivan/gmt/man/triangulate.html

... 3.0.4 - 3.0.18 only, PHP 4 >= 4.0.0) imap_fetch_overview -- Read an overview of the information in the headers of the given message . array imap_fetch_overview ( int imap_stream, string sequence [, int flags]) . ... mbox = imap_open("{your.imap.host:143}","username","password") or die("can't connect: ".imap_last_error()); $overview = imap_fetch_overview($mbox,"2,4:6",0); if(is_array($overview)) { reset($overview); while( list($key,$val) = each($overview)) { print $val->msgno . ... val->subject . ...

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• odbc_tables
• imap_mail_move
• odbc_columns

... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

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• SDPlight
• SDPpred

... Calls also src_prepare with eapi older than 2. base_src_unpack() { debug-print-function $FUNCNAME "$@" pushd "${WORKDIR}" > /dev/null if [[ $(type -t unpacker_src_unpack) == "function" ]] ; then unpacker_src_unpack elif [[ -n ${A} ]] ; then unpack ${A} fi has src_prepare ${BASE_EXPF} || base_src_prepare popd > /dev/null } # @FUNCTION: base_src_prepare # @DESCRIPTION: # The base src_prepare function, which is exported # EAPI is greater or equal to 2. ...

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• http://mirror.msu.net/pub/gentoo-portage/eclass/pam.eclass
• http://mirror.msu.net/pub/gentoo-portage/eclass/kde5-functions.eclass
• http://mirror.msu.net/pub/rfc-editor/rfc-ed-all/pdfrfc/rfc2013.txt.pdf

... It is recommended that all lines of text be shorter than 80 characters in length. An example sequence in FASTA . ... Sequences are expected to be represented in the standard IUB/IUPAC amino acid and nucleic acid codes, with these exceptions: lower-case letters are accepted and are mapped into upper-case; a single hyphen or dash can be used to represent a gap of indeterminate length; and in amino acid sequences, U and * are acceptable letters (see below). ...

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• GeneBee BLAST 2.2.22+ Services Help
• GeneBee BLAST 2.2.8 Services Help
• AliComp - GeneBee Alignment Comparison Help

Each row in the Particles Table describes a particle - anti-particle pair. ... 2*Spin for a doubled particle spin: 0 for scalar, 1 for spinor and 2 for vector particles. ... In this case the anti-particle "A+" is transformed by conjugated representation. ... Aux for an auxiliary field which allows to modify particle propagators. ... spin 0 case: . ... Zero mass vector particle must be marked as a gauge one using the Aux field (see below). ... is permitted for vector ( 2*spin=2 ) particle. ...

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... MAST - Motif Alignment and Search Tool . ... The E-value of a sequence is the expected number of sequences in a random database of the same size that would match the motifs as well as the sequence does and is equal to the combined p-value of the sequence times the number of sequences in the database. ... Following the description line(s) is a line giving the length, combined p-value, and E-value of the sequence as defined in Section I. The next line reproduces the motif diagram from Section II. ...

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• UniProt fields
• SwissProt fields

You are here: Foswiki > System Web > Plugins > TwistyPlugin > VarTWISTY (27 Oct 2010, ProjectContributor ) E dit A ttach . ... optional, default none . ... hide" or "show" . ... Image url . Deprecated, use showimgleft, hideimgleft, showimgright or hideimgright. optional, defaults to no image . ... Specify the url of an image that will be displayed with the hide link at the left side of the link. ... Alternatively use an image attached to the topic. optional, defaults to no image . ... Link label . ...

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• PageOptimizerPlugin < System < Foswiki
• YahooUserInterfaceContrib < System < Foswiki
• VarENCODE < System < Foswiki

The QKeyEvent class contains parameters that describe a key event. ... QKeyEvent  ( int type, int key, int ascii, int state )  . ... void  accept  ()  . ... Key events occur when a key is pressed or released when a widget has keyboard input focus. A key event contains a special accept flag which tells whether the receiver wants the key. ... Constructs a key event object. ... Sets the accept flag of the key event object. ... Clears the accept flag parameter of the key event object. ...

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• Qt Toolkit - QImageIO Class
• Qt Toolkit - QRegion Class
• Qt Toolkit - QCloseEvent Class

... Instructions are in README.TXT file inside the tarball. ... tar -xvf nhunt_x86.tar Query and database files should contain sequences in FASTA format ( wikipedia description ). ... Default name of the output file is 'nhunt.out'. ... Any parameter consists of key and value and is called as '-key value', where 'key' is one character and 'value' is any number of characters. -i Query file . ... No default value. -d Database file . ... No default value. -o Output file . ... Default value: 'nhunt.out' . ...

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