... 6 import sequence . ... 19 * self.alignment -- alignment object, which the block belongs to . ... 22 * self.positions -- list of positions of the alignment.body that . ... 34 def __init__ ( self , alignment , sequences = None , positions = None ): . ... sequences : . ... 75 If more than one pdb chain for some sequence provided, consider all of them . ... 129 alignment_sequence = self . ... 130 return ( alignment_sequence [ i ] for i in self . ... 132 def ca_atoms ( self , sequence , pdb_chain ): . ...

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• allpy: b2ec17578145 lib/block.py
• allpy: a016cad5f5a0 lib/block.py
• allpy: ab9e2260a60a lib/block.py

... Distances between sequences . It is considered that the space, where all amino acids and sequences are analysed, is a metric one. ... When the distance between amino acids is entered, it is rather easy to consider such measure as pair distance between sequences in any position of alignment (in fact, this distance is just a distance between two amino acids). As distance is an additional quantity, pair distance between sequences on all alignment positions can be easily defined. ...

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• About this project
• SDP home page

... Alternative core new atoms (%) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Geometrical core of a set of structures is a subset of alignment positions those atoms are disposed similarly in all structures. ... For any two positions included into geometrical core, the distances between CA atoms of those positions in all structures may differ not more than the value of the parameter "Distance spreading". ...

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• PLANdbAffy: probe-level annotation database for Affymetrix expression

... Minimal size of Clud clusters (residues) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Hydrophobic cluster of a single protein structure is a separated pool of nonpolar atoms. Usually there is the biggest cluster in the protein called hydrophobic core. ... ConClus program is able to detect of conservative hydrophobic clusters for a family of related protein domains or just for a set of aligned proteins. ...

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This diagram illustrates the effects of absolutely positioning a box ("inner") with respect to a containing block established by a relatively positioned ancestor ("outer"). ... The "inner" box has been positioned relative to the top and left edges of the "outer" element's first inline box. ... The reference edges for positioning the "inner" box are indicated in the diagram by thick dashed lines. ... 1 Beginning of body contents.| ... 4 [(+200, -100)] 5 Inner 6 contents. ... Inner contents" is blue. ...

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• Long description illustrating absolute positioning with respect to the initial
• Long description for example illustrating absolute positioning
• Long description of example illustrating table row height calculations and

... High-scoring Sequences . ... The E-value of a sequence is the expected number of sequences in a random database of the same size that would match the motifs as well as the sequence does and is equal to the combined p-value of the sequence times the number of sequences in the database. ... Sequence Name . ... Following the description line(s) is a line giving the length, combined p-value, and E-value of the sequence as defined in Section I. The next line reproduces the motif diagram from Section II. ...

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... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

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• SDPlight
• SDPpred
• SDPsite

... Description . Catalog . ... In the Catalog, we publish equatorial (ЮБ 2000 , ЮД 2000 ) and galactic (l,b) coordinates of cluster centers derived as the position of overdensity in 2MASS catalog (Koposov et al. ... Distances, color-excesses and ages are the mean-square values calculated using all available evaluations from different color-magnitude diagrams. ... There are individual pages for every cluster where all available plots and parameters are published. ... 2002). ...

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... It interpolates the grid at the positions in the table and writes out the table with the interpolated values added as a new column. A bicubic [Default] or bilinear [ -Q ] interpolation is used, requiring boundary conditions at the limits of the region (see -L flag option). xyfile This is an ASCII [or binary, see -b ] file where the first 2 columns hold the (x,y) positions where the user wants to sample the 2-D data set. ... Default is 2 input columns]. -bo Selects binary output. ...

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• http://xray.sai.msu.ru/~ivan/gmt/man/fitcircle.html
• http://xray.sai.msu.ru/~ivan/gmt/man/gmtselect.html
• http://xray.sai.msu.ru/~ivan/gmt/man/blockmedian.html

... GeneBee . ... A4 - Genebee Adaptive Automated Annotation . ... Annotation title . General options . ... DotHelix options . ... threshold (4 to 50) . ... DNA/RNA Dayhoff Johnson Blosum 30 Blosum 50 Blosum 62 Pam 60 Pam 120 Pam 250 Gonnet 120 Gonnet 250 Gonnet 350 . Supermotif's options . ... Maximum number . ... FT fragment picture options . Max number of FT . ... Other options . ...

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• RNA secondary structure prediction
• FASTA format description
• Screening by similarity

... PHP 4 >= 4.0.0) swf_polarview -- Define the viewer's position with polar coordinates . void swf_polarview ( float dist, float azimuth, float incidence, float twist) . ... The dist parameter gives the distance between the viewpoint to the world space origin. The azimuth parameter defines the azimuthal angle in the x,y coordinate plane, measured in distance from the y axis. The incidence parameter defines the angle of incidence in the y,z plane, measured in distance from the z axis. ...

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• gzseek
• dio_seek
• substr

Multichannel Flare Spectrograph . ... phi - the angle between the green vertical line passing through the solar disk image and the violet radius vector "r" of the object located at the center of the spectrograph slit- red cross. positive - clockwise, negative - counterclockwise . ... mx = x coordinate of the coelostat main mirror . ... x : carthesian solar coordinate alog axis parallel to solar equator (in arcsec) . y : carthesian solar coordinate alog axis parallel to solar axis (in arcsec) ...

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• Anna Mel'nik - Description of the catalog

... A regular expression (regex) is a powerful way of specifying a complex search. MySQL uses regular Henry Spencer's inplementation of regular expressions. ... MySQL uses the extended version. This is a simplistic reference that skips the details. To get more exact information, see Henry Spencer's regex(7) manual page that is included in the source distribution. ... A regular expression describes a set of strings. The simplest regexp is one that has no special characters in it. ...

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• A Description of NNTP

Evalign . Evalign is a computerised evaluation method for protein sequence alignment algorithm. It compares computer alignments with structural alignments of protein sequences and tells how correct your sequence alignment program is. It gives additional information on the characteristics of different alignment algorithms and shows types specific failings in alignment. ... None . ... SAL Home | Other Scientific Fields | Chemistry, Biology Related . ... SAL@KachinaTech.COM . ...

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• SAL- Other Scientific Fields - Chemistry, Biology Related - HMMER
• SAL- Other Scientific Fields - Chemistry, Biology Related - SC_rate
• SAL- Other Scientific Fields - Chemistry, Biology Related - ClustalW

The method for homologous recombination detection within bacterial species Anastasia S. Kalinina1, Alexandra L. Suvorikova Vladimir G. Spokoiny 1 1,2,4 , 1,3,4 , Mikhail S. Gelfand 1,5 A.A. Kharkevich ... of sexual reproduction in bacteria, transfer of DNA fragments from cell to cell and introducing these fragments into a genome by homologous recombination plays a major role in spreading beneficial mutations through the population ...

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• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/244.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/197.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/237.pdf

... Postdoctoral research position in heterogeneous catalysis is available in the International Joint Research Lab for Ecoefficient Products and Processes (E2P2L) which is joint research center between Solvay and French National Center for Scientific Research in Shanghai (http://www.e2p2l.com). ... International Joint Research Lab for Ecoefficient Products and Processes (E2P2L) is joint research center between Solvay and French National Center for Scientific Research in Shanghai (http://www.e2p2l.com). ...

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... Plugin Installation Instructions . ... WikiRing Consultants This plugin will help you to write readable markup (TWikiMarkup, HMTL, ...) within TWiki by allowing tags and arguments to be formatted on multiple lines. ... Basically, there are two ways of glueing and recombining lines by either removing all whitespaces between two lines using %*~~ or by removing all whitespaces and separateing lines with a single space using %~~~ . ... lib/TWiki/Plugins/GluePlugin.pm . ... TWiki:Plugins/GluePlugin . ...

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• GluePlugin - TWiki - TWiki - (printable)

Brain Research Group >> Research >> Change-point analysis ... << previous next >> . ... When detection of the change-points in alpha band power was performed as in the previous subsection, more than one change-point per second was obtained in average. ... The hypothesis of the hierarchy of EEG segmental descriptions (Kaplan 1998) (see subsection 7.3.2) is a theoretical reason for introducing the adjustment of the change-point detection probability. ...

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• Nonparametric approaches to the description of EEG piecewise stationary

. аљб?аКаОаВаОаДб?б?аВаО аПаОаЛб?аЗаОаВаАб?аЕаЛб? Gnumeric . Prev . Next . MID -- . MID(string, position, length) . т?Еб?аВб?а?аПа?аПб?а? б?б?б?а?а?а?б?аЗа? б?аВ а?а?а?б?аЗб? @string б?аПа?б?б?аПа?а?а?а?а?а? а? @position б?б?б?б?б?б? @lenght а?б?б?б?б?б?б?б?. аМа?аП а?а?б?аЗа?б?а? а?б?б?б?б?а?а?б?б?аП а? Excel. MID("аЗб?аПа?а?аПб?",4,3) а?аПб?б?а?б?а?а?а? "а?а?аП". LEFT , RIGHT . Prev . Home . Next . MEDIAN . Up . MIN

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• Long Description

Copyright 1999-2016 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Id$ EAPI=6 PYTHON_COMPAT=( python2_7 python3_{3,4,5} pypy pypy3 ) inherit distutils-r1 DESCRIPTION= ANSI escape character sequences for colored terminal text cursor positioning HOMEPAGE= https :// pypi .python.org/ pypi / colorama https ://github.com/tartley/ colorama SRC_URI= mirror:// ...

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• http://mirror.msu.net/pub/gentoo-portage/dev-python/colorama/colorama-0.3.6-r1.ebuild
• http://mirror.msu.net/pub/gentoo-portage/dev-python/colorama/colorama-0.3.3.ebuild
• http://mirror.msu.net/pub/gentoo-portage/sci-biology/mafft/mafft-7.215.ebuild