... Tested and fixed Block.process(*, False, False) In this ivokation process only copies gap patterns, not sequence names. It is equivalent to calling Block._replace_column_contents. Previously this function assumed self is Alignment and that each monomer in self.sequences is visible in columns. ... 2 from allpy import dna . ... 8 count = {} . ... 14 return "+" . ... 25 def find_runs ( markup ): . ... 33 plus_positions = [] . ... 66 for column in alignment . ... 68 markup = alignment . ...

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• allpy: 670ae384aa37 test/usecase2.py
• allpy: 56d62d405021 test/usecase2.py
• allpy: c8e6b75fe280 test/usecase2.py

... Alternative core new atoms (%) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Geometrical core of a set of structures is a subset of alignment positions those atoms are disposed similarly in all structures. ... For any two positions included into geometrical core, the distances between CA atoms of those positions in all structures may differ not more than the value of the parameter "Distance spreading". ...

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. SDPpred: a tool for prediction of amino acid residues . that determine differences in functional specificity of homologous proteins .

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• Example of supporting positions
• About this project
• About authors ot this complex

... Minimal size of Clud clusters (residues) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Hydrophobic cluster of a single protein structure is a separated pool of nonpolar atoms. Usually there is the biggest cluster in the protein called hydrophobic core. ... ConClus program is able to detect of conservative hydrophobic clusters for a family of related protein domains or just for a set of aligned proteins. ...

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... PhD position at the University of Geneva, Switzerland (information theory, digital communications, coding, statistical signal processing) . PhD POSITION (up to 4 years), . STOCHASTIC INFORMATION PROCESSING GROUP, COMPUTER VISION AND MULTIMEDIA LABORATORY . ... The candidate is expected to hold a MSc (Diploma) degree in electrical engineering/applied math/computer science with the strong background in information theory, digital communications, coding or statistical signal processing. ...

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• MMOnline | Форумы | Аспирантура | Аспирантура ин-т Макса Планка / ун-т

... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

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• SDPlight
• SDPpred
• SDPsite

Chair of General Physics and Wave Processes, Physics Faculty of MSU . ... Science and education . ... Scientific Laboratories . ... Science . ... Education . 20.09.2009 . 3-d International Laser Graduate School "Modern Problems of Laser Physics LGS-2009 " . Moscow Vyatichi, November 9 - 11, 2009. ... Main Science and education Scientific Laboratories Laboratory of ultrafast processes in biology . ... All laboratory`s grants . ... 2009 ILC MSU Made in: Sebekon IT Solutions . ...

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• Сайт кафедры общей физики и волновых процессов
• Laboratory of Nonlinear Spectroscopy of Ultrafast Processes in Condensed Matter

... Next: Stopping the scanning process Up: Surface scanning Previous: Restarting scanning process Contents Index . If sample goes too far or too close to the tip during scanning due to drift or other causes, it is possible to lift or to lower it using commands for single-step approach/retraction. ... Next: Stopping the scanning process Up: Surface scanning Previous: Restarting scanning process Contents Index Filonov 2005-02-04 ...

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• Restarting scanning process
• Stopping the scanning process
• Sample landing preferences

... High-scoring Sequences . ... The E-value of a sequence is the expected number of sequences in a random database of the same size that would match the motifs as well as the sequence does and is equal to the combined p-value of the sequence times the number of sequences in the database. ... Sequence Name . ... Following the description line(s) is a line giving the length, combined p-value, and E-value of the sequence as defined in Section I. The next line reproduces the motif diagram from Section II. ...

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TES data processing aims to divide the total field into components and to cancel these, caused by geological noise. The interpretation is fulfilled firstly in 1D variant (in the frame of horizontally-layered model, with IPI-1D package), and then in 2D variant (with IE2DL package). ... This model can be corrected with the help of different transformations for better seeing position and form of the deep objects. ... Two different approaches to the interpretation of profile VES data are possible. ...

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Evalign . Evalign is a computerised evaluation method for protein sequence alignment algorithm. It compares computer alignments with structural alignments of protein sequences and tells how correct your sequence alignment program is. It gives additional information on the characteristics of different alignment algorithms and shows types specific failings in alignment. ... None . ... SAL Home | Other Scientific Fields | Chemistry, Biology Related . ... SAL@KachinaTech.COM . ...

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• SAL- Scientific Data Processing Visualization - Libraries - Graphite
• SAL- Other Scientific Fields - Chemistry, Biology Related - SC_rate
• SAL- Computer Graphics, Images Signals - Processing Visualization - HIPS

... GeneBee . ... AliBee - Multiple Alignment . ... Comments on output . ... Minimum letter frequence . ... Minimum homology ratio (0 to 1) . ... DNA/RNA Blosum 30 Blosum 50 Blosum 62 Dayhoff Johnson . ... Default DNA\RNA Protein . ... Result Alignment Format: . GeneBee Fasta (Pearson) Fasta (DNA) Clustal (ALN) Phylip PIR Text . ... Extra tree format . None Phylip Phylip (multiline) Nexus Nexus (TREES block only) Hennig86 . ... You can paste or edit your sequences right here (in FASTA format) . ...

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• Screening by similarity
• RNA secondary structure prediction
• Genebee Predicted Annotation Help

Estimation of translational importance of mammalian mRNA nucleotide sequence characteristics based on ribosomal profiling data O.A. Volkova1,*, Y.V. Kondrakhin2,3, R.N. Sharipov 1 2,3,4 Institute of Cytology and Genetics, SB RAS, Novosibirsk, Russia 2 Design ... Novosibirsk, Russia 4 Novosibirsk State University, Novosibirsk, Russia *ov@bionet.nsc.ru Keywords: ribosome profiling, RiboSeq, 5'UTR , mRNA , ... Until recent time there were no experimental data on the translation efficiency. ...

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• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/42.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/33.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/222.pdf

... Postdoctoral research position in heterogeneous catalysis is available in the International Joint Research Lab for Ecoefficient Products and Processes (E2P2L) which is joint research center between Solvay and French National Center for Scientific Research in Shanghai (http://www.e2p2l.com). ... International Joint Research Lab for Ecoefficient Products and Processes (E2P2L) is joint research center between Solvay and French National Center for Scientific Research in Shanghai (http://www.e2p2l.com). ...

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• "Специалист по сканирующей зондовой микроскопии" - вакансия в разделе "Работа

... Argos + GPS positions Data provided Improving Location Conclusion: getting better locations Doppler effect f < f0 f0 f > f0 Apparent frequency shift observed as the receiver is moving Relative motion between transmitter and receiver TX f0 Doppler effect Doppler effect : Each Message Received Tells us the Tag is somewhere on a CТne ity Satellite veloc A s xi ta pt ellit te sa Some geometry : intersection between a plan and a conic surface Intersection with Altitude Sphere: Two Solutions!! ...

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• http://www.sevin.ru/seminars/argos/Data%20Processing%20and%20services.pdf
• http://www.sevin.ru/seminars/argos/TRACK%20and%20LOC.pdf
• Экологический Форум - Фундаментальная Экология: Leading positioned by implies

Электронная библиотека Попечительского совета . ... Karlin S., Taylor H.E. - A Second Course in Stochastic Processes . ... Название: A Second Course in Stochastic Processes . Авторы: Karlin S., Taylor H.E. Аннотация: . This Second Course continues the development of the theory and applications of stochastic processes as promised in the preface of . A First Course. ... Bessel process 175-176 327 336 . ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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• Steen W.M. - Laser material Processing :: Электронная библиотека
• Поиск книг, содержащих position-dependent band edges :: Электронная библиотека
• Shimizu T., de Carvalho M.M., Laurindo F.J.B. - Strategic Alignment Process and

... Лаборатория теоретической биофизики . ... FRAP kinetics can be measured from image series directly with numpy libraries. ... Here we provide script that helps you to remove sample motion and obtain FRAP kinetics from image series with console script. ... Here oribl is a small image and _im is full image. ... Нет комментариев " Python script for processing FRAP image set " . ... Python script for processing FRAP image set . ... 2015 ERG Research Group . ...

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• comcon1 ERG Research Group: Лаборатория теоретической биофизики
• python ERG Research Group: Лаборатория теоретической биофизики

... Definitions . ... file . ... All collective I/O calls on a file are collective over this group. displacement . ... The displacement defines the location where a view begins. ... etype . ... Each process has its own view of the file, defined by three quantities: a displacement, an etype, and a filetype. ... Etypes and filetypes . ... For any given view, the end of file is the offset of the first etype accessible in the current view starting after the last byte in the file. file pointer . ... Центры ....

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• Derived datatypes | PARALLEL.RU - Информационно-аналитический центр по
• Data Access Routines | PARALLEL.RU - Информационно-аналитический центр по
• Opening a File | PARALLEL.RU - Информационно-аналитический центр по

Russian page . Office: room A-402 (or C-03), Geological Department, Moscow State University, Vorobievi Gori, Moscow,119899, Russia Office Phone 07(095)-939-18-41, Fax: 07(095)-9328889 Email: pavel@web.ru . My Biographical INFO is not interesting, and you could skip it .. ... Associate Proffessor, Moscow State University, Geological Department, Experimental Petrology & Data Processing. ... Volcanism of the Kurile-Kamchatka Arc is a one of the most interesting petrologic problem. ...

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... Laboratory of Mathematical Methods of Image Processing . ... Congratulations to our alumni (bachelors) . ... Grid warping for image sharpening using one-dimensional approach (Andrey Krylov, Alexandra Nasonova, Andrey Nasonov) . ... Grid warping in total variation image enhancement methods (ICIP 2014, Andrey Nasonov, Andrey Krylov) . Image warping in dermatological image hair removal (ICIAR 2014, Alexandra Nasonova, Andrey Nasonov, Andrey Krylov, Ivan Pechenko, Alexey Umnov, Natalia Makhneva) . ...

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• View publication | Laboratory of Mathematical Methods of Image Processing
• Research | Laboratory of Mathematical Methods of Image Processing