... Sat, 09 Jun 2012 21:03:13 +0400 . Daniil Alexeyevsky . ... Hidded the misbehaved not-to-be-released-publically SequenceSecondaryStructureMarkup class into allpy.structure to postpone the problem of introducing the proper secondary structure markup to after the release while not breaking the added functionality of blocks3d; please note, this is a very dirty hack . ... Wed, 20 Jul 2011 20:44:59 +0400 . ... Added allpy.markups.MarkupIOMixin to simplify new saveable markups creation. ...

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• allpy: log

S .. ... a database of structures of DNA-protein and RNA-protein complexes. ... a program for finding hydrophobic clusters in 3D structures of macromolecules . ... search of conserved hydrophobic clusters in aligned 3D structures of protein families . ... a program for analysis of multiple alignments . ... a program for automatic detection of aligned blocks in a multiple protein alignment. ... a program for detection of aligned blocks in a multiple alignment of sequences of PDB chains. ...

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... Sun , 19 Dec 2010 19:49:53 GMT Daniil Alexeyevsky me.dendik@тАж [41:bcad0f5464bf] * snake.py ( modified ) snake.Rule.load: give reasonable error rather than crash on empty lines Sun , 19 Dec 2010 19:46:39 GMT Daniil Alexeyevsky me.dendik@тАж [40:94945f11c78d] * snake.py ( modified ) snake.Snake.fill: tail takes precedence over body head Sun , 19 Dec 2010 19:45:31 ...

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• http://kodomo.cmm.msu.su/trac/snake/log/?format=changelog&rev=44%3Aa7e53eb3f54d&limit=100&mode=stop_on_copy
• http://kodomo.cmm.msu.su/trac/snake/log/?format=changelog&rev=46%3A85221e4417b7&limit=100&mode=stop_on_copy
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... Sun , 19 Dec 2010 19:49:53 GMT Daniil Alexeyevsky me.dendik@тАж [41:bcad0f5464bf] * snake.py ( modified ) snake.Rule.load: give reasonable error rather than crash on empty lines Sun , 19 Dec 2010 19:46:39 GMT Daniil Alexeyevsky me.dendik@тАж [40:94945f11c78d] * snake.py ( modified ) snake.Snake.fill: tail takes precedence over body head Sun , 19 Dec 2010 19:45:31 ...

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• http://kodomo.cmm.msu.ru/trac/snake/log/?format=changelog&rev=46%3A85221e4417b7&limit=100&mode=stop_on_copy

... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

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Routing on lattice-cellular structures" . Ryabov G.G. An extension of the class of lattice graphs is considered. In order to become close to the Euclidean metric, inclusion of additional ribs with weights equal to the corresponding lengths of vectors in the Euclidean space is performed in a neighborhood on the lattice. ... An algorithm for constructing a set of the shortest paths on such a lattice is proposed. ... PostScript (in Russian) (6.04MB) . PDF (in Russian) (710KB) . ...

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... If there's no significant multiple alignment , including the sequence, that you interest, then the secondary structure is built, using only the energy model (just the potential energy of the system is minimized), but very often such method will give unreliable results. ... It should be mentioned that by default, at alignment case, the RNA secondary structure will be predicted for the first sequence of the alignment. ... It is done through optimizing, not the real, but model energy of the structure. ...

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• Screening protein sequence against PROSITE databank

Research of residue contacts within the polypeptide chains depending on the density of information in the sequence S. D. Koshman Moscow Institute of Physics and Technology, koshman86@mail.ru A.A.Zinchenko Shemyakin-Ovchinnikov Institute RAS, alezina@mail.ru A.N. Nekrasov Shemyakin-Ovchinnikov Institute RAS, alexei_nekrasov@mail.ru INTRODUCTION. ... The developed program allows exploring the contacts between amino acid residues depending on their information types. ...

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• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/244.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/101.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/81.pdf

... LDAP is the Lightweight Directory Access Protocol, and is a protocol used to access "Directory Servers". ... Search surname entry $sr= ldap _ search ($ds, o=My Company, c=US , sn=S* ); echo Search result is .$sr. p ; echo Number of entires returned is . ldap _count_ entries ($ds,$sr). p ; echo Getting entries ... p ; $info = ldap _ get _ entries ($ds, $sr); ... ldap_get_attributes -- Get attributes from a search result entry . ... ldap_get_entries -- Get all result entries...

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• Alternative syntax for control structures
• mysql_close
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This home page belongs to small group of scientists working at . Sternberg Astronomical Institute which is a part of Moscow State University . ... Электронная библиотека научно-технической и художественной литературы (доступна только из ГАИШ) . ... Local staff . Dr. Edward Kononovich (konon -at- sai.msu.ru), Associate Professor . ... Dr. Sergey Ayukov (asv -at- sai.msu.ru), Research Fellow, Webmaster of the group . ... Joint seminar of Solar Studies Structure Group and Solar Photometry Group . ...

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• Not so well documented Device Helpers in OS/2
• Work notes
• Image: Flower of lotus. Unfortunately, I was unable to come close.

Электронная библиотека Попечительского совета . ... Kechris A.S., Louveau A. - Descriptive Set Theory and the Structure of Sets of Uniqueness . ... Название: Descriptive Set Theory and the Structure of Sets of Uniqueness . Авторы: Kechris A.S., Louveau A. Язык: . ... Cantor Uniqueness Theorem for countable closed sets 32 . ... Set of extended uniqueness 76 . Set of interior uniqueness 47 . Set of local extended uniqueness 269 . Set of local uniqueness 227 . ... Set of uniqueness 24 . ...

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• Morris S. - Pontryagin Duality and the Structure of Locally Compact Abelian
• Veltkamp R.C. - Closed Object Boundaries From Scattered Points :: Электронная
• Daepp U., Gorkin P. - Reading, writing and proving. Close look at mathematics

The existence of oceanic islands and seamounts is supposed to be the one of the main evidence of the plate tectonic theory. But there is no such acient geological object which could be so similar to rock complex of oceanic island. These structures must include the alkaline magmatism manifestation, sedimentary rocks close to recent riff limestone on the oceanic islands and sequence of terrigenic rocks. ... 100.00 . ... H 2 O calculated by the 100% norm of cations. d.l.. ...

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.

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• PubMed medline query

... 2011/12/09 . ... added alignment merging . added parameter corresponding to the width of output alignment . fixed homologue searching for very long query sequences . ... Copyright 2010-2011 Yury Pekov ...

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• ConClus

The QBuffer class is an I/O device that operates on a QByteArray More... #include < qbuffer.h > . Inherits QIODevice . ... QBuffer  ()  . ... QByteArray  buffer  () const . ... virtual bool  open  ( int )  . ... virtual int  at  () const . virtual bool  at  ( int )  . ... virtual int  putch  ( int )  . virtual int  ungetch  ( int )  . ... QBuffer is an I/O device for reading and writing a memory buffer. ... Returns TRUE if successful, otherwise FALSE. ... Reimplemented from QIODevice. ...

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• Unknown Constructed Types
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... The first-order intermolecular perturbation theory developed in the frame of diatomics-in-molecule approach is used to calculate the potential energy surfaces of the Ar.. Cl2 complex in the states which correlate with the X0g+ and B0u+ states of Cl2 fragment. ... Laboratory of Molecular Structure and Quantum Mechanics ...

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• M. Ya. Melnikov, V.A. Smirnov Handbook of Photochemistry of Organic Radicals
• The Molecular Structure of 2-Chloroacrolein Studied by Gas Electron

Astronomy Picture of the Day . ... Tonight and over the next few days, when Mars is at its closest approach to Earth in nearly 60,000 years, you might get your best view ever of our planetary neighbor. Please, though, don't expect to see this much structure , or expect to see Mars rotate so much in so brief a period. ... In reality, one full Martian rotation -- a Martian day -- is only about 40 minutes longer than an Earth day. ... Publications with keywords: Mars . ... Victoria Crater on Mars . ...

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• Астронет > Earth Webcam Catches Mars Rotation
• Journal "Peremennye Zvezdy"
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... Previous message: [RU-NGI] Fwd: [Network-support] Closing the IPv6 Survey on October 31. The following NGIs please provide your input) . Next message: [RU-NGI] Fwd: [Network-support] Closing the IPv6 Survey on October 31. ... About the current IPv6 deployment level and know-how on IPv6 by NGIs ИЯИ нет 1. ... Есть желание > > ========== Письмо с запросом от EGI (FYI) ================== > > -------- Original Message -------- > Subject: [Network-support] Closing the IPv6 Survey on October 31. ...

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• Structure of LanHEP input file
• MRS structure functions
• LanHEP

Next: SYSTEM CALL: msgget() Up: Internal and User Data Previous: Kernel msqid_ds structure . The kernel stores permission information for IPC objects in a structure of type ipc_perm . ... struct ipc_perm { key_t key; ushort uid; /* owner euid and egid */ ushort gid; ushort cuid; /* creator euid and egid */ ushort cgid; ushort mode; /* access modes see mode flags below */ ushort seq; /* slot usage sequence number */ }; . ... Finally, the slot usage sequence number is stored at the end. ...

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• The Linux Kernel: Table of Contents
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... Annex (e.g. 3.1) (3) Paragraph/ Figure/Table/ Note (e.g. Table 1) 4 Type of comment2 5 Comment (justification for change) by the MB Date: (6) Document: (7) Secretariat observations on each comment submitted Proposed change by the MB RU RU RU RU 2 2 2 2 Row 2 Row 4 Row 4 Row 5 ed ed ed te SEPs are not fluxes , but particles It is desirable to add that Wolf number is also known as the sunspot number. ... CLOSED: Accepted and implemented in modified form CLOSED: Accepted and RU 2 Row 16 . ...

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