... annotate . ... 2 import data.codes . dendik@1100 . 3 from data.genetic_code import standard_dna_code . ... 14 by_name = {} . ... 17 class Sequence ( base . ... 21 """Return a new sequence, reverse-complement to self. dendik@930 . ... 23 Name of the sequence is name of self with apostrophe added. dendik@930 . ... 35 def translated ( self , code = None , name = None , description = None , source = None ): . ... 38 `code` is a dict of triplet of dna `code1`s -> aminoacid `name`. dendik@1100 . ...

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The files containing information about Affymetrix microarrays were downloaded from the official Affymetrix site. ... Probe sequences were mapped to the genome using Blat. ... The hits found "probe alignment regions" were . ... We annotated each probe alignment region using the mRNA and EST alignments provided by UCSC, considering only . ... The textual part of the interface consists of probe information section, probe alignment section and transcription state . ... Each gene and each probe alignment . ...

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... FUNCTION: bzr _initial_fetch # @USAGE: repository URI branch directory # @ DESCRIPTION : # Internal function, retrieves the source code from a repository for the # first time, using ${ EBZR _FETCH_CMD}. bzr _initial_fetch() { local repo_uri=$1 branch_dir =$2 if [[ -n ${ EBZR _OFFLINE} ]]; then ewarn EBZR _OFFLINE cannot be used when there is no local branch yet. fi # fetch branch ... d ${branch_dir}/.bzr ]]; then if [[ ${repo_dir} != "${branch_dir}" && ! ...

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