... Removed ` monomer . sequence ` attribute * Removed unncecessary specialcasing in pickle * Removed unused tests * Restored APIs to backward-compatible * Added deprecated messages to the restored APIs diff -r 149cb9d89283 -r 2b3cad50c2b1 allpy/base.py --- a/allpy/base.py Sun Jun 10 15:20:37 2012 +0400 +++ b/allpy/base.py Sun Jun 10 16:08:47 2012 +0400 @@ -29,9 +29,6 @@ by_ name = {} A mapping from full monomer name to ...

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• allpy: allpy/base.py diff
• allpy: df571a5233fb
• allpy: 632a0708ab33 allpy/fileio.py

The files containing information about Affymetrix microarrays were downloaded from the official Affymetrix site. ... Probe sequences were mapped to the genome using Blat. ... The hits found "probe alignment regions" were . ... We annotated each probe alignment region using the mRNA and EST alignments provided by UCSC, considering only . ... The textual part of the interface consists of probe information section, probe alignment section and transcription state . ... Each gene and each probe alignment . ...

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... Method Detail protected final void init ( ConcreteIndexMap.ZZMap iMap, ConcreteIndexMap.ZZMap lengthsMap) . ... iMap - ZZMap defining the forward transform. protected final void link ( ConcreteIndexMap prev, ConcreteIndexMap.ZZMap iMap, ConcreteIndexMap.ZZMap lengthsMap) . ... prev - ConcreteIndexMap this is composed with. iMap - ZZMap defining the forward transform. lengthsMap - ZZMap defining the reverse transform. protected final void link ( ConcreteIndexMap prev, ConcreteIndexMap.ZZMap iMap) . ...

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• API Help
• : API Help
• : Package ucar.netcdf

. PHP Manual . Prev . Next . (3.0.3 - 3.0.18 only, PHP 4 >= 4.0.0) hw_Document_Attributes -- object record of hw_document . string hw_document_attributes ( int hw_document) . Returns the object record of the document. For backward compatibility, hw_documentattributes() is also accepted. This is deprecated, however. See also hw_document_bodytag() , and hw_document_size() . Prev . Home . Next . hw_DocByAnchorObj . Up . hw_Document_BodyTag

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• hw_changeobject
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... О UNИX . ... Неизменяемая страница . ... Processing Instructions . ... redirect . ... pragma . ... deprecated . ... MoinMoin processing instructions have the same semantics as in XML: they control the paths taken when processing a page. ... For more information on the possible markup, see HelpOnEditing . Processing instructions MoinMoin knows of: . ... Redirect to a different page (see PageRedirect ) #REDIRECT pagename . ... Sets processing modes for this page: #PRAGMA mode arguments . ...

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• mod_setenvif - Apache HTTP Server

... О UNИX . ... Неизменяемая страница . ... Processing Instructions . ... redirect . ... pragma . ... deprecated . ... MoinMoin processing instructions have the same semantics as in XML: they control the paths taken when processing a page. ... For more information on the possible markup, see HelpOnEditing . Processing instructions MoinMoin knows of: . ... Redirect to a different page (see PageRedirect ) #REDIRECT pagename . ... Sets processing modes for this page: #PRAGMA mode arguments . ...

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Some additional inquiry information . ... Rule of fours . The sequences in alignment can be casual. ... But we can tell, that the more the alignment tries to satisfy the rule of fours, the better it is. ... But, according to the rule of fours, we can take 3 sums of distances between sequences (there are six distances: |AB|, ... The more is the meaning of this parameter, the more exactly the rule or fours is satisfied, and, hence, the better the considered alignment is. ...

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• Inquiry information || Distances
• Inquiry information || Parsimony algorithm
• SVETKA, a program for multiple sequence alignments analysus

... A regular expression (regex) is a powerful way of specifying a complex search. MySQL uses regular Henry Spencer's inplementation of regular expressions. ... MySQL uses the extended version. This is a simplistic reference that skips the details. To get more exact information, see Henry Spencer's regex(7) manual page that is included in the source distribution. ... A regular expression describes a set of strings. The simplest regexp is one that has no special characters in it. ...

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• Changes between HTML 3.2 and HTML 4.0
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... It is recommended that all lines of text be shorter than 80 characters in length. An example sequence in FASTA . ... Sequences are expected to be represented in the standard IUB/IUPAC amino acid and nucleic acid codes, with these exceptions: lower-case letters are accepted and are mapped into upper-case; a single hyphen or dash can be used to represent a gap of indeterminate length; and in amino acid sequences, U and * are acceptable letters (see below). ...

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Brain Research Group >> Research >> Change-point analysis ... << previous next >> . ... When detection of the change-points in alpha band power was performed as in the previous subsection, more than one change-point per second was obtained in average. ... The hypothesis of the hierarchy of EEG segmental descriptions (Kaplan 1998) (see subsection 7.3.2) is a theoretical reason for introducing the adjustment of the change-point detection probability. ...

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HMMER . The HMMER hidden Markov model software package and other software for large-scale genome analysis using probabilistic models of proteins and RNAs, from Sean Eddy's lab at Washington University, St. Louis USA. HMMER -- Hidden Markov models for sequence profile analysis. ... COVE -- an implementation of stochastic context free grammar methods for RNA sequence/structure analysis. ... SAL Home | Other Scientific Fields | Chemistry, Biology Related . ... SAL@KachinaTech.COM . ...

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• Zen: CASDB
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... Множественное выравнивание последовательностей. ... Ознакомление с программой Muscle. ... Выполнив команду: wossname alignment я посмотрела список программ EMDOSS, так или иначе связанных с выравниваниями: aligncopy Reads and writes alignments aligncopypair Reads and writes pairs from alignments consambig Create an ambiguous consensus sequence from a multiple alignment diffseq Compare and report features of two similar sequences distmat Create a distance matrix from a multiple ...

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... Calls also src_prepare with eapi older than 2. base_src_unpack() { debug-print-function $FUNCNAME "$@" pushd "${WORKDIR}" > /dev/null if [[ $(type -t unpacker_src_unpack) == "function" ]] ; then unpacker_src_unpack elif [[ -n ${A} ]] ; then unpack ${A} fi has src_prepare ${BASE_EXPF} || base_src_prepare popd > /dev/null } # @FUNCTION: base_src_prepare # @DESCRIPTION: # The base src_prepare function, which is exported # EAPI is greater or equal to 2. ...

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• http://mirror.msu.net/pub/rfc-editor/rfc-ed-all/pdfrfc/rfc2079.txt.pdf
• http://mirror.msu.net/pub/rfc-editor/rfc-ed-all/rfc2079.txt
• http://mirror.msu.net/pub/gentoo-portage/eclass/scons-utils.eclass

... Siberian Lang . Minority languages of Siberia as our cultural heritage . ... The project ?Development of the web-site ?Minority languages of Siberia as our cultural heritage? (on the material of the languages of the basin Middle Yenisei and the Middle and the Upper Taz)? was realized at the Laboratory for Computational Lexicography, Research Computing Centre, Lomonosov Moscow State University, with financial support from Russian Foundation for the Humanities, grant 12-04-12049.љ ...

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