... 1.1 --- a/ allpy /base.py Tue Feb 01 23:08:08 2011 +0300 1.2 +++ b/ allpy /base.py Wed Feb 02 21:28:18 2011 +0300 1.3 @@ -158,34 +158,31 @@ 1.4 If sequence is too short, pad it with gaps on the right. 1.5 1.6 self .sequences.append( sequence ) 1.7 - for i, monomer in enumerate( sequence ): 1.8 - self ._ column_at (i)[ sequence ] = monomer 1.9 + self ._pad_to_width(len( sequence )) 1.10 + for column , ... Return self. 1.51 @@ -350,9 +347,12 @@ 1.52 not_gap = lambda (a,b): a != ...

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• allpy: 316122b6b70e
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The files containing information about Affymetrix microarrays were downloaded from the official Affymetrix site. ... Probe sequences were mapped to the genome using Blat. ... The hits found "probe alignment regions" were . ... We annotated each probe alignment region using the mRNA and EST alignments provided by UCSC, considering only . ... The textual part of the interface consists of probe information section, probe alignment section and transcription state . ... Each gene and each probe alignment . ...

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Some additional inquiry information . ... Rule of fours . The sequences in alignment can be casual. ... But we can tell, that the more the alignment tries to satisfy the rule of fours, the better it is. ... But, according to the rule of fours, we can take 3 sums of distances between sequences (there are six distances: |AB|, ... The more is the meaning of this parameter, the more exactly the rule or fours is satisfied, and, hence, the better the considered alignment is. ...

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You are here: Foswiki > System Web > Macros > VarFORMFIELD (19 Sep 2010, ProjectContributor ) E dit A ttach . ... rev="n" . ... Text shown if the field is defined in the topic, but the field value is empty. ... Text shown if the field is not defined in the topic (even if it is specified in the form definition). ... Format string. $value expands to the field value, and $name expands to the field name, $title to the field title, $form to the name of the form the field is in. ... topic=".. ... System . ...

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Brain Research Group >> Research >> Change-point analysis ... << previous next >> . ... When detection of the change-points in alpha band power was performed as in the previous subsection, more than one change-point per second was obtained in average. ... The hypothesis of the hierarchy of EEG segmental descriptions (Kaplan 1998) (see subsection 7.3.2) is a theoretical reason for introducing the adjustment of the change-point detection probability. ...

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HMMER . The HMMER hidden Markov model software package and other software for large-scale genome analysis using probabilistic models of proteins and RNAs, from Sean Eddy's lab at Washington University, St. Louis USA. HMMER -- Hidden Markov models for sequence profile analysis. ... COVE -- an implementation of stochastic context free grammar methods for RNA sequence/structure analysis. ... SAL Home | Other Scientific Fields | Chemistry, Biology Related . ... SAL@KachinaTech.COM . ...

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... Множественное выравнивание последовательностей. ... Ознакомление с программой Muscle. ... Выполнив команду: wossname alignment я посмотрела список программ EMDOSS, так или иначе связанных с выравниваниями: aligncopy Reads and writes alignments aligncopypair Reads and writes pairs from alignments consambig Create an ambiguous consensus sequence from a multiple alignment diffseq Compare and report features of two similar sequences distmat Create a distance matrix from a multiple ...

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. [ Войти ] . Главная -> Фильмы -> No Strings Attached . Пользователи . Демо . Деньги . Фильмы . Форум . No Strings Attached . США 1997 . отметить . Триллер . Драма . Мистика .

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... Siberian Lang . Minority languages of Siberia as our cultural heritage . ... The project ?Development of the web-site ?Minority languages of Siberia as our cultural heritage? (on the material of the languages of the basin Middle Yenisei and the Middle and the Upper Taz)? was realized at the Laboratory for Computational Lexicography, Research Computing Centre, Lomonosov Moscow State University, with financial support from Russian Foundation for the Humanities, grant 12-04-12049.љ ...

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