. Set 1: List of species Reference tree . Set 2: List of species Reference tree . Set 3: List of species Reference tree . Set 4: List of species Reference tree . For the set 1 . For the sets 2 4

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• Align tool for DNA-protein complexes

Home . Database of structures of nucleic acid - protein complexes . ... List of complexes . Pfam families . SCOP families . Interaction classes . ... NPIDB . ... Information on SCOP and Pfam domains detected in protein chains is presented. ... Each family has its own web page with the list of entries that include domains of the family. ... List of SCOP domains occurred in DNA-protein and RNA-protein complexes is organized in tree-like form, according to the SCOP classification. ...

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... Alpha and beta proteins (a+b) . ... TBP-like . ... TATA-box binding protein-like . ... TATA-box binding protein (TBP), C-terminal domain . protein domain . ... Human (Homo sapiens) [TaxId: 9606] . ... Thale cress (Arabidopsis thaliana) [TaxId: 3702] . ... Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] . ... Archaeon Pyrococcus woesei [TaxId: 2262] . ...

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• SCOP famyli: TATA-box binding protein (TBP), C-terminal domain
• SCOP famyli: Intein (protein splicing domain)
• SCOP famyli: Replication terminator protein (Tus)

... Другие названия журнала: Protein Expr Purif , Protein Expr. ... Zakharova G.S. , Poloznikov A.A. , Chubar T.A. , Gazaryan I.G. , Tishkov V.I. в журнале Protein Expression and Purification , издательство Academic Press (United States) , том 113, ? ... в журнале Protein Expression and Purification , издательство Academic Press (United States) , том 90, ? ... 2012 Expression, purification and some properties of fluorescent chimeras of human small heat shock proteins Protein Expr Purif . ...

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• Proteins: Structure, Function and Bioinformatics - журнал | ИСТИНА -
• Biochimica et Biophysica Acta - Proteins and Proteomics - журнал | ИСТИНА -
• Protein engineering - журнал | ИСТИНА - Интеллектуальная Система Тематического

... Scanning probe microscopy (SPM) allows the visualization of single protein molecules and their complexes with membranes. ... Antibodies . ... Self-assembly in protein-membrane systems . ... Self-assembled nanostructures form from membrane proteins, e.g. ATP-syntase and cytochrome P450 [5]. ... Kiselyova O.I., Yaminsky I.V. "Proteins and memrane-protein complexes" in Scanning Probe Microscopy of Biopolymers (Ed. by Yaminsky I.V., Scientific World, Moscow, 1997) p. 41. (in Russian). ...

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• AFM OF RNA AND RNA-PROTEINS COMPLEXES
• INTAS-01-0045
• Igor Yaminsky's homepage

Protein Explorer . The Protein Explorer (PE) enables you to view and explore the three-dimensional (3D) structure of any macromolecule. You can explore proteins, DNA, RNA, carbohydrates, and complexes, such as between transcriptional regulatory proteins and DNA, or enzymes and drugs. ... None . ... SAL Home | Other Scientific Fields | Chemistry, Biology Related . ... SAL@KachinaTech.COM . ...

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• SAL- Other Scientific Fields - Chemistry, Biology Related - Protein Structure
• SAL- Other Scientific Fields - Chemistry, Biology Related - BRAGI
• SAL- Other Scientific Fields - Chemistry, Biology Related - E-Cell

... Protection of proteins from oxidative stress: a new illusion or a novel strategy? ... Proteins damaged by oxidative stress have the most dangerous consequences. ... Hydrophobic antioxidants are not very effective in protecting proteins from oxidative modification. At the same time, the natural hydrophilic antioxidant and anti-glycating agent carnosine efficiently prevents oxidative modification of proteins and increases the life span of experimental animals under unfavorable conditions. ...

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• Erythrocyte and plasma protein modification in alcoholism: a possible role of
• A protein whose binding to Na,K-ATPase is regulated by ouabain.
• Structure and properties of chimeric small heat shock proteins containing

Group "Biomedical applications for proteins and enzymes. Pharma Biotechnology" . ... Associate Professor Babusenko E.S. (Protein encapsulation) http://www.muctr.ru/univsubs/infacol/ekolog/faculties/f3 . ... Professor Shvetz V.I. , associate Professor Sorokoumova G.M. (Lipid- based protein delivery systems) http://www.mitht.ru . ... Scryabin Moscow Academy of Veterinary Medicine and Biotechnology, Professor Belousova R.V. (Antiviral action of protein preparations) http://www.mgavm.ru . ...

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• Genetic and Protein Engineering Group
• Members of Genetic and Protein Engineering Group
• Group of Genetic Engineering and Protein Design

... Added class Column to different dna/rna/protein modules too . ... 1 import base . 2 import data.codes . ... 4 import protein . ... 6 class Monomer ( base . ... 7 """Protein monomers: aminoacids.""" . 8 type = 'protein' . 9 types = protein . ... protein ) . ... 15 class Protein ( list ): . 16 """User defined protein; list of protein_sequences.""" . ... 19 class Sequence ( base . ... 22 class Column ( base . ... 25 class Alignment ( base . ... 28 class Block ( Alignment , base . ...

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• allpy: c4c772e3ce86 allpy/protein.py
• allpy: faa7e19bffd9 allpy/protein.py
• allpy: 058e307d1c06 allpy/protein.py

Development of inhibitors of human and Mycobacteium tuberculosis serine/threonine protein kinases as promising agents for treatment of various diseases , from type II diabetes to Alzheimer's disease . Protein kinases are enzymes playing a key role in many therapeutically significant signal pathways. ... Des. ... Drug Des. 2011, 78, 378-390 . ... 2011, 30, 169-180 . ... Serine/threonine protein kinases . ... 2016 Laboratory of Medicinal Chemistry ...

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• Research - Laboratory of Medicinal Chemistry

Электронная библиотека Попечительского совета . ... Gelb M.H. - Protein Lipidation Protocols . ... Название: Protein Lipidation Protocols . Автор: Gelb M.H. Аннотация: . ... Protein Lipidation Protocols offers biochemists, cell and molecular biologists, medicinal chemists, and pharmaceutical researchers state-of-the-art tools for understanding the complex biochemistry of protein lipidation. ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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• Fu H. - Protein-Protein Interactions. Methods and Applications :: Электронная
• Zhang A. - Protein interaction networks: computational analysis :: Электронная
• Webster d. - Protein Structure Prediction. Methods and Protocols :: Электронная

... Protein Dynamics as Determinant of Function. ... Graph Matching with Dual-Step EM algorithm. IEEE Trans. ... A Graduated Assignment Algorithm for Graph Matching. ... Protein Structure Compaison by Alignment of Distance Matrices. ... Protein Structure: Insights from Graph Theory. ... Global and Local Protein Matching . A novel method for protein comparison based on EM-SVD (Expectation Maximization - Singular Value Decomposition) will be developed both for global and local similarities. ...

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• Screening pattern or alignmemt against PROTEIN databank
• Laboratory of protein synthesis regulation
• Screening of pattern or alignment against PROTEIN databank

... PDB ID or protein name . OPM release 1.1 . ... ABOUT OPM . DOWNLOAD OPM FILES . ... Protein Classification . ... All proteins in OPM (598 entries) . Protein Links . PDB Sum , PDB , MSD , SCOP , Swiss-Prot , Pfam , OCA , MMDB , FSSP , HSSP . ... Topology in Bacterial gram-negative inner membrane . ... Major Intrinsic Protein (MIP) (1 family) 1.A.8 (TCDB) . ... Localization: Bacterial gram-negative inner membrane (67 proteins) . 1ldf ТЛ Glycerol uptake facilitator . ...

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• 1OKC ТЛ Mitochondrial ADP/ATP carrier - Orientations of Proteins in Membranes
• Элемент вторичной структуры белка "ClpB protein"
• Контакты Mg 2+ с белком "ClpB protein" по данным записи 1jbk

. The work is supported by the Russian Foundation for Basic Research, grant 10-07-00685-a . PDB . Classification . Domain instances . Bonded with NA . 1B01 . GENE REGULATION/DNA . 2 . 2 . 1EA4 . GENE REGULATION/DNA . 10 . 10 . 2HZV . METAL BINDING PROTEIN/DNA . 8 . 8 . total (3 entries) . 20 . 20 . No comments on this family . Send your questions and comments to sas@belozersky.msu.ru .

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• Cluster 3
• Cluster 29
• MTPro

of the division of CHEMISTRY OF NATURAL COMPOUNDS . Veronika V. Anisimova , Junior researcher . Galina N. Balandina , Associate Professor . ... Galina I. Lavrenova , Associate Professor . Elena N. Lysogorskaya , Senior researcher . Elena S. Oksenoit , Researcher . Galina N. Rudenskaya , head of research group . Natalya V. Sumbatyan , Junior researcher . List of other divisions and laboratories of the Chemistry Department . Home Page of the Chemistry Department ...

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• Moscow University Chemistry Bulletin Vol. 52, No. 2, P. 113 (2011)
• Moscow University Chemistry Bulletin Vol. 42, No. 5, P. 355 (2001)
• Moscow University Chemistry Bulletin Vol. 55, No. 3, P. 158 (2014)

Sorex araneus . Temporal and spatial distribution of Rad51 protein in spermatocytes of the common shrew Sorex araneus L. (Soricidae, Eulipotyphla) . ... We used antibodies against human Rad51 to examine the temporal and spatial distribution of Rad51 in the spermatocytes of the common shrew Sorex araneus (Eulipotyphla, Soricidae). ... Synaptonemal complexes of the common shrew Sorex araneus L. in spermatocyte spreads // Cytogenetics and Cell Genetics. ... Chromosomes of the common shrew // Nature. ...

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Protein docking algorithm based on structural homology with protein-protein interfaces T. Kirys, A.V. Tuzikov United Institute of Informatics Problems, National Academy of Sciences of Belarus, Surganova, 6, Minsk, tuzikov@newman.bas-net.by An original protein docking algorithm based on structural similarity with experimentally determined protein-protein interfaces is proposed. ... The alignment is performed by dynamic programming on distance matrices of protein and interface. ...

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• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/157.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/228.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/126.pdf

... Many protein families contain homologous proteins that have a common biological function but different specificity. Given a multiple sequence alignment of a family divided into specificity groups, SDPpred predicts a set of alignment positions ( SDP, Specificity-Determining Positions ) that determine differences in the functional specificity. ... 2004) Automated selection of positions determining functional specificity of proteins by comparative analysis of orthologous groups in protein families. ...

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• SDPsite - Algorithm Format requirements
• SDPlight
• SDPsite

... Esipova N.G. , Lobachev V.M. , Tumanyan V.G. , Davidova L.I. 1 , Fedoruk K.V. 1 , Bogush V.G. 1 , Debabov V.G. 1 . ... CD-study of the recombinant proteins of spidroin I and spidroin II type recovers poly-lproline II left-helical conformation as basic structure of this protein. This type conformation was found for the first time in b-structural silks. We observe isobestic point at the CD-curves of water solutes of the recombinant proteins at various concentrations. ... 2007 Biophysics dep., ...

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Computation of contribution from the cavity effect to protein-ligand binding free energy" . Grigoriev F.V., Jabin S.N., Romanov A.N., Sulimov V.B. Some results of the study of the cavitation effect, which provides an essential part of hydrophobic interactions due to the formation of protein-ligand complexes, are discussed. ... The main contribution to the cavitation effect is due to the annihilation of the cavity of the ligand. ... PostScript (in Russian) (14.1MB) . PDF (in Russian) (697KB) . ...

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• "An algorithm of assigning the force parameters to atoms of organic molecules