... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

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... Bijective coding in the constructive world of R n c " . ... These methods are directed on an efficient computer implementation during the storage and computation of topological, metric and combinatorial performances of such structures for large values of n. The Hausdorff-Hamming metric for k -faces on an n -cube is extended to the Gromov-Hausdorff metric between "cubic" metric spaces. Simplicial partitions in an n -cube, their bijective coding, and ergodic properties are considered. ...

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• "On the metric-topological computing in the constructive world of cubic
• "Machine learning algorithms for analysis and categorization of electronic text
• "Wall boundary conditions and mesh dependency of the solution for the

IGLA-3D is a modular method for construction of pairwise 3D alignments (superpositions) of protein structures. ... the first module (IS) constructs an initial superposition of two protein structures or an initial core, the second module (AC) constructs alignment core given proteins superposition, the third module (FM) finds a motion (shift and rotation) that optimally superimposes the alignment core, the forth module (SM) evaluates the similarity of proteins given a 3D alignment of these proteins. ...

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• RNA secondary structure prediction

This home page belongs to small group of scientists working at . Sternberg Astronomical Institute which is a part of Moscow State University . ... Электронная библиотека научно-технической и художественной литературы (доступна только из ГАИШ) . ... Local staff . Dr. Edward Kononovich (konon -at- sai.msu.ru), Associate Professor . ... Dr. Sergey Ayukov (asv -at- sai.msu.ru), Research Fellow, Webmaster of the group . ... Joint seminar of Solar Studies Structure Group and Solar Photometry Group . ...

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Электронная библиотека Попечительского совета . ... Panasenko G.P. - Multiscale Modelling for Structures and Composites . ... Название: Multiscale Modelling for Structures and Composites . Автор: Panasenko G.P. Аннотация: . Rod structures are widely used in modern engineering. ... Moreover, a lot of modern structures are made of composite materials and therefore the material of the rods is not homogeneous. ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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• G?nther A. - Large-scale Structures in Rayleigh-Benard Convection and Flow Over
• O'Raifeartaigh L. - Group Structure of Gauge Theories :: Электронная библиотека
• Drmac Z. (ed.), Tutek Z. (ed.), Marusic M. (ed.) - Proceedings of the

Secondary structures in the coding regions of mRNAs: literature survey and comparison of prediction methods Aleksandra Vasileva3, Michael Kiening1, Dmitrij Frishman1, 1 2,3 Department of Bioinformatics, Technische UniversitДt MЭnchen ... 195251 , Russia, aleksandra.vasileva.spbpu@gmail.com mRNA molecules contain three main domains ­ 5'UTR (untranslated region), CDS ( coding region), and 3'UTR ... One of the options in this case is to compute the distance between two RNA structures. ... Fig. ...

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• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/96.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/167.pdf

Fortran-DVM Compiler . Detailed design . ... 3.1 Parsing . 3.2 Transforming parse tree . 3.3 Generating code in Fortran 77 . ... 4.2 Symbol and Type table . ... This report presents the detailed description of the Fortran-DVM (FDVM) compiler implementation. ... The input to the compiler is source code in Fortran DVM or HPF-DVM language. ... It is designed as an open C++ class library that provides a set of parsers, a structured parse tree, a symbol and type tables for a user. ... dvm.cpp . ...

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... Computer software has been developed for crystal chemistry analysis of arrangement of molecules in organic crystals on the basis of concepts worked out in the studies conducted by P.M.Zorky et al. ... The standard crystal chemistry analysis includes: . ... Constructing various graphic representations of the crystal structure and of its fragments, which clearly demonstrate arrangement of molecules, in particular, constructing representations of the most close molecule-molecule contacts. ...

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• Molecular Structure and Physicochemical Properties of Acetone-Chloroform...
• Supermolecular Structure on and Physico-chemical Properties of Liquid Systems.
• The influence of crystallization conditions and postcrystallization processes

... Research programm of the laboratory-chair< . ... Laboratory-chair of Discrete mechanics on a microscopic scale . ... Thus the structures of the physical world are not physical objects but physical processes. ... The primitive entity is called a material point. ... The value of the property “existence” of the material point varies from “the material point does not exist” to “the material point exists” by this process. ... Let call this structure a dynamical graph or a d-graph. ...

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• Laboratory-chair of modelling the natural references of time
• Russian Interdisciplinary Temporology Seminar
• Laboratory-Division Quantum Electrodynamics of Self-Organizing Systems and

... Alternative core new atoms (%) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Geometrical core of a set of structures is a subset of alignment positions those atoms are disposed similarly in all structures. ... For any two positions included into geometrical core, the distances between CA atoms of those positions in all structures may differ not more than the value of the parameter "Distance spreading". ...

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• wLake program homepage

The CompHEP symbolic output can be used for further manipulation with an answer which has been obtained by means of the built-in symbolic calculator. It might be a summation of all diagrams to a common denominator expression, a symbolic integration of answer, a representation of answer as a function of special set of variables and so on. ... As it was mentioned above (Section ) the result obtained by summation of all diagrams must be symmetrized in the case of identical outgoing particles. ...

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• Tensor ghost.
• Menu 8.
• calg:dubna07:abstracts [THEP]

... Online Services | ... Construct your query and output by sequental openings of needed fields. One output field must be selected (not be blank) at least. ... Query parameters: . Select for output . ... Energy (keV) . ... Y D H M S MS US NS PS FS AS EV KEV MEV or Stable . ... Energy of the ?-ray (keV) . ... Energy parameters of nucleus (B , Alpha energy, N, P separation energy) . ... Neutron separation energy (keV) . Proton separation energy (keV) . ... Excited energy(keV) . ...

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... Classification of the engineering geological Earth's structures and their characteristic (Project manager – Prof. Trofimov V.T.; investigator – Ass. ... Artificial soils as a result of technogenesis (Project manager - Prof. Trofimov V.T.; investigator - Ass. ... Tgheoretical problems of evolution of engineering geological Earth's conditions at the epoch of technogenesis (Project manager - Prof. Trofimov V.T.; investigator – Senior Research Worker Kyrinov M.B.); . ... Project manager . ... 1998-2000 ...

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... Supercomputing Technologies in Science, Education and Industry Almanac Series . ... Octoshell: Lightweight and Innovative Cluster Management System . ... AREA: Inorganic Chemistry . ... Moscow State Uiversity . ... USAGE: Fundamental science - inorganic chemistry, solid state chemistry, materials science . AREA: Inorganic Chemistry, Physical Chemistry, Structure and Dynamics of Atomic-Molecular Systems . ... Research Computing Center (RCC) of Lomonosov Moscow State University . ...

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• APPLICATIONS: Theoretical Physics | Moscow University Supercomputing Center
• APPLICATIONS: Aerophysics | Moscow University Supercomputing Center
• APPLICATIONS: Mathematics | Moscow University Supercomputing Center

Hide Zen home . ... Index . ... Do we really need them for database indexing ? ... We need simple numbering scheme, so that for any given point we could easily calculate the number of "pixel", this is what HealPix provides and lacks HTM. ... During Rtree queries the number of index blocks read is several times greater than during Q3C queries. ... But in Q3C scheme, as we showed before, the circle is segmented, so we extract from the database only a few percents more data than occur in the circle. ...

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• GiST - Introduction
• SAL- Programming - Tools & Utilities - GRASP
• SAL- Programming - Tools & Utilities - XTL

Non-perturbative renormalization scheme in application to chiral perturbation theory in the nucleon sector N.A. Tsirova Samara State University, Samara, Russia J.-F. Mathiot Laboratoire de Physique Corpusculaire, Aubiere, France QFTHEP 2011 Outline · Introduction: LFEFT · · · · · Covariant Light-Front Dynamics Fock sector dependent renormalization scheme Taylor-Lagrange regularization scheme Application to ...

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• http://qfthep.sinp.msu.ru/talks2013/shleenkov.pdf
• http://qfthep.sinp.msu.ru/talks2011/APopov_doklad.pdf

... Minimal size of Clud clusters (residues) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Hydrophobic cluster of a single protein structure is a separated pool of nonpolar atoms. Usually there is the biggest cluster in the protein called hydrophobic core. ... ConClus program is able to detect of conservative hydrophobic clusters for a family of related protein domains or just for a set of aligned proteins. ...

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... In this article we considerљcalculationљof discrete Laplacian for 1D arrays usingљpython/numpy/scipy. We introduceљthe sparse matrix technique that is rather efficient for computation of certain types of diffusion PDE. ... 1 комментарий " Constructing discrete Laplacian via sparse matrix " . Reaction-diffusion systems in 2D space with python ERG Research Group: Лаборатория теоретической биофизики написал (Январь 26th, 2016 2:13 пп) . ... Constructing discrete Laplacian via sparse matrix . ...

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... V.V.Shevchenko, Sternberg State Astronomical Institute, Moscow University, Universitetsky 13, Moscow 119899, Russia, shev@sai.msu.ru . ... 1.Sternberg State Astronomical Institute, 119899, Moscow, Russia. shev@sai.msu.ru . ... V.V.Shevchenko, Sternberg State Astronomical Institute, Moscow University, Moscow 119992, Russia, shev@sai.msu.ru . ... 119992 Moscow, Russia; . ... 2Sternberg Astronomical Institute, Moscow University, Moscow, 119992, Russia, . ... Moscow, 119992, Russia shev@sai.msu.ru . ...

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RNA Tertiary Structure Modelling . ... Two steps to fold coarse-grained model of RNA tertiary structure . ... fill in RNA secondary structure form with CT format (also with pseudoknots); . ... push "Finish Step #1" button to obtain secondary and intermediate* structures. * intermediate structure is the structure with minimum of "free energy" contains formed helixes and stacking, but without tertiary interactions . RNA secondary structure form . ... some useful RNA secondary structure databases: . ...

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• IfStatements - TWiki - TWiki - (printable)
• IfStatements - TWiki - TWiki
• %TOPICTITLE% ( vs. 1) - TWiki