... 10 import sequence . ... 12 import allpy_data . ... 14 class Project ( object ): . ... 19 * alignment -- dict . ... 27 def __init__ ( self , * args ): . ... 31 Project(sequences, alignment) -> new Project with sequences and . ... 33 Project(fasta_file) -> new Project, read alignment and sequences . ... sequences , self . ... 97 >>> sequences,alignment=project.Project.get_from_fasta(open("test.fasta")) . ... 133 alignment [ sequences [ - 1 ]] = alignment_list . 134 return sequences , alignment . ...

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• allpy: 65c3e3aad2e4 lib/project.py
• allpy: df571a5233fb
• allpy: 3161cdaf2ff9 lib/block.py

... Query: E. coli K12 tRNA (valV, selC, asnV, leuT, argZ from EMBL entry U00096 ) . ... BLASTN (both) | ... Nhunt . ... BLASTN (optimal): 3.5 s . BLASTN (default): 0.8 s . ... Nhunt: 7 s The program Nhunt surpass all other tested programs in sensitivity. ... Nhunt BLASTN (optimal): 2.9 s . ... Nhunt: 3.7 s BLASTN with default parameters actually cannot find any significant homologues. ... Nhunt-3: 1.7 s BLASTN with default parameters actually cann't find any significant homologues. ...

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• ConClus

Scoring Matrices . Matrix Sequences Sequence Consisting of the first four Amino Acids in the Protein GYRB_ECOL: . ... Sequence Achieved by Substitution of the 2nd and 4th Amino Acid and Insertion between the 3d and 4th Amino Acid, in the Protein GYRB_ECOLI, to randomly chosen new amino acids: . ... Matrix Sequences Sequence Consisting of the First Nine Amino Acids of the Protein GYRB_ECOLI: . ... Sequence Consisting of 2nd, 3d, 7th, 8th and 9th Amino Acid Residues of the Protein GYRB_ECOLI: . ...

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• Term 2
• Marakhovskaya's page

SVETKA, a program for analysis of different alignments . Back to the help page . ... Such a feature can look like " Leucine in the position 362 of the alignment of the entire family " and can, in many cases, be a "decision rule" to distinguish sequences from two sides of a tree branch. ... Comparing the alignment with an input tree (the tree may be entered by the user or reconstructed with the WPGMA algorithm), the program detects supporting positions of the alignment for every branch the tree. ...

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• SVETKA, a program for multiple sequence alignments analysus
• SDP home page
• Molecular biology databases

Anchoring patterns and point mutations in pairwise alignments using AlignMe X-ray crystal structures have revealed that numerous membrane proteins, such as GPCRs or some secondary transporters, despite the lack of any detectable sequence similarity between them, still share very similar 3D structures. ... The novel feature allows the user to define any number of anchors with varying strength for improving the quality of pairwise alignments in challenging cases lacking notable sequence similarity. ...

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• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/179.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/39.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/215.pdf

Электронная библиотека Попечительского совета . ... Brown S.M. - Bioinformatics: A Biologist's Guide to Biocomputing and the Internet . ... Название: Bioinformatics: A Biologist's Guide to Biocomputing and the Internet . Автор: Brown S.M. Аннотация: . A practical overview of bioinformatics, for researchers. ... Also discusses and evaluated programs for PCs, the Internet, and mainframes. DLC: Bioinformatics. ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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• Lathrop R.H., Rogers Jr R.G., Smith T.F. - A Bayes-optimal sequence-structure
• Althaus E. - A branch-and-cut algorithm for multiple sequence alignment ::
• Jalote P. - An integrated approach to software engineering :: Электронная

SVETKA, a program for Analysis of Multiple Sequence Alignments . ... Analyse your alignment . ... Alignment . Nota Bene! .aln or .fasta format required!! Look here for comments . ... Nota Bene! Special scheme format required! ... Development of the program is supported by Ministry of Education and Science of the Russian Federation (State Contract No. ...

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• S : rm_systems
• Geometrical core
• Example of alignment

Roman Sutormin rsutormin@gmail.com Professional experience 05/2013 ­ present: Lawrence Berkeley National Laboratory (Berkeley, CA, USA) Software developer Development of JSON based storage system used for keeping biological data involved in public KBase services. ... 10/2009 ­ 08/2011: Mail.Ru Group (Moscow, Russia), Software developer Support and development of data warehouse (PostgreSQL) and administration web tool (JBoss + GWT) on serverside of MMO game "Allods Online". ... 2013 Jul 1514(1):476. ...

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• http://storage.bioinf.fbb.msu.ru/~roman/Sutormin_CV_aug2013.pdf

... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

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• SDPpred
• RNA Alignment
• SDPsite

Выберите категорию обращения: Общие вопросы Отчеты Рейтинги Диссертационные советы Конкурсы Ввод данных Структура организаций Пользователи Проблемы с регистрацией\входом в систему . ... Войти в систему . ... Koonin E.V. , Gorbalenya A.E. в журнале Protein sequences & data analysis , издательство Springer International (Berlin, Germany) , том 5, ? ...

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• Metallomics : integrated biometal science - журнал | ИСТИНА - Интеллектуальная
• Journal of Integrated Design and Process Science - журнал | ИСТИНА -
• International Journal of Integrated Supply Management - журнал | ИСТИНА -

... x25BA; Courses . x25BA; Integrated course . Search courses: . Course categories: Integrated course Integrated course / Teaching with Technology Integrated course / Teaching with Technology / Курсы повышения квалификации Integrated course / Teaching with Technology / Курсы повышения квалификации / English Language Courses Разное . ... Управляющий: Алла Леонидовна Назаренко . ... Students will utilize Moodle, an online course management system, as they work to complete the project.љ ...

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• moodle: Teaching with Technology
• moodle: Курсы повышения квалификации
• moodle: English Language Courses

Изучение статистики наиболее длинной общей подпослеовательности двух случайных подпоследовательностей является одной из самых интересных и трудных задач вычислительной математической биологии. В докладе будут представлены результаты, касающиеся статистического распределения общих подпоследовательностей в упрощенном (некоррелированном) варианте модели, т.наз. модели Бернулли . ...

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• Selected publications of Chertovich, Alexander Viktorovich
• Selected publications of Lazutin, Alexei Alexandrovich
• Sequence Design of Copolymers with Special Functional Properties - Chair of

Home . Database of structures of nucleic acid - protein complexes . ... List of complexes . Pfam families . SCOP families . Interaction classes . ... NPIDB . ... Information on SCOP and Pfam domains detected in protein chains is presented. ... Each family has its own web page with the list of entries that include domains of the family. ... List of SCOP domains occurred in DNA-protein and RNA-protein complexes is organized in tree-like form, according to the SCOP classification. ...

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... In photonics, light is used to transfer and process information. Currently, data transfer it is done at considerably higher rates in optical fibers than in the electric cables. ... In this course, we will consider elements of contemporary integrated photonics: light sources (on-chip lasers and coupling of the free-space radiation); waveguides, splitters and mixers; interferometers and cavities; active elements (modulators, repeaters and amplifiers). ...

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M. Li, S. Piskarev. On the approximation of integrated semigroups // Taiwanese Journal of Mathematics. Vol. ... 2010. 2137-2161. This paper is devoted to approximation of integrated semigroups in space and in time variables. ... Ключевые слова: abstract differential equations in Banach spaces, $C_0$-semigroups, integrated semigroups, Trotter-Kato theorem, discretization methods, difference schemes, stability of difference schemes, discrete semigroups, Banach spaces. ...

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• Piskarev S. On approximation of integrated semigroups // International
• M. Li, V. Morozov, S. Piskarev. On the approximation of derivatives of
• E.P. Gordov, M.V. Kabanov, V.A. Krutikov, V.I. Kuzin, V.N. Lykosov, I.G.

... Another way to fend off and detect impostors is to use call sequence checks. Call sequence checks help you protect against intruders that somehow managed to find out the password you log into your UUCP system with. ... When the attacker call your UUCP feed and steals your mail, this will increase the feeds call sequence number by one. ... If you have enabled call sequence checks, you should check your log files regularly for error messages that hint at possible attacks. ...

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• UUCP-based Transports

... Химического факультета МГУ . Спецкурсы кафедры химической энзимологии . Программа спецкурса . Биоинформатика - предмет и методы исследований, основные приложения. ... Математические основы выравнивания последовательностей символов. ... Поиск гомологичных последовательносткй ДНК/белков в базах данных. ... Современные методы предсказания вторичной и третичной структуры белков на основе первичной структуры. Метод моделирования по гомологиям. ... Стратегия моделирования структуры белков: . ...

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• Moscow University Chemistry Bulletin Vol. 55, No. 2, P. 79 (2014)

# Copyright 1999-2015 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Id$ EAPI=5 EBO_DESCRIPTION="Clustal Omega - Scalable multiple protein sequences alignment" AUTOTOOLS_AUTORECONF=1 inherit emboss-r1 KEYWORDS="amd64 x86 ~x86-linux ~ppc-macos" RDEPEND+=" sci-biology/clustal-omega" PATCHES=( "${FILESDIR}"/${P}_fix-build-system.patch )

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• http://mirror.msu.net/pub/gentoo-portage/sci-biology/fasta/fasta-35.4.10.ebuild
• http://mirror.msu.net/pub/gentoo-portage/sci-biology/clustal-omega/clustal-omega-1.2.1.ebuild
• http://mirror.msu.net/pub/gentoo-portage/sci-biology/fasta/fasta-36.3.5e.ebuild

. [ Войти ] . Главная -> Фильмы -> The Lost Spider Pit Sequence . Пользователи . Демо . Деньги . Фильмы . Форум . The Lost Spider Pit Sequence . Новая Зеландия 2005 . отметить . Фантастика . Ужасы . Триллер .

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• The Transporter 2 - Фильмы - Kinfo.ru
• Transporter 3 - Фильмы - Kinfo.ru

... The article examines the possibility of using an integrated indicator of educational levels priority on the basis of integrated indicator of higher education priority, reflecting the general direction of public policy in higher education and the funding priorities. ... Integrated Indicator of Educational Levels Priority, Integrated Indicator of Higher Education Priority, Integrated Indicator of Professional Training, Educational Services Market, Public Administration, Public Educational Strategy. ...

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