... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

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Some additional inquiry information . ... WPGMA . As any cluster method , UPGMA (unweighted pair-group method of analysis) performs the structure of a set of some homogeneous elements ( in our case alignment is a set of amino acid sequences ). ... Firstly, when we calculate correlations between distance matrices on the whole alignment and on separate position (for selecting "diagnostic" positions) - we should be sure that these data are not distorted by multiple repeating of one sequence. ...

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• Molecular biology databases
• ETS sequence conservation
• About this project

... Example with GPS Positions GPS position acquisitions Coding in Argos Messages Messages collection by satellites Messages relay to CLS GPS position decoding Distributed displayed Data Processing 1 Message n°1 11010101011001 2 3 4 5 F O R M A T R E C O G N I T I O N D A T A E X T R A C T I O N data n°1 Air T°C = 22.5°C Message n°2 00101011101010010 101000000000001 P R O C E S S I N G C O N T R O L S P R O V I S I O N W ind speed = 4 m/s ... Has my platform entered/left an area of interest?...

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... Alternative core new atoms (%) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Geometrical core of a set of structures is a subset of alignment positions those atoms are disposed similarly in all structures. ... For any two positions included into geometrical core, the distances between CA atoms of those positions in all structures may differ not more than the value of the parameter "Distance spreading". ...

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• PLANdbAffy: probe-level annotation database for Affymetrix expression

The database of RNA secondary structure elements E.F. Baulin, Institute of Mathematical Problems in Biology, Pushchino, Russia, Higher Schoo l of Economics, Moscow, Russia ... Russia, Higher Schoo l of Economics, Moscow, Russia, mroytberg@lpm.org.ru We propose a new definition of the loop, which on the one hand is a generalization of the definition of Mathews-Turner [1], and on the other hand allows to divide into loops an arbitrary secondary ...

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• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/134.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/42.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/35.pdf

1995, Biochemistry, 60, 8, 923-928. ... Basic server procedures are dedicated to homology (similarity) search of sequence and 3D structure of proteins. The homologies found could be used to build multiple alignments, predict protein and RNA secondary structure, and construct phylogenetic trees. In addition to traditional methods of sequence similarity search, the authors propose "non-matrix" (correlational) search. ... RNA Secondary Structure Prediction Based on Sequence Alignment . ...

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• RNA secondary structure prediction
• GeneBee service
• Databases

CGAL . The CGAL project is a collaborative effort to develop a robust, easy to use, and efficient C++ software library of geometric data structures and algorithms. The CGAL library contains: . ... License Type: Free for Academic Research and Teaching Purposes, Commercial License Available . ... http://www.cs.uu.nl/CGAL/ . http://www.algorithmic-solutions.com/ (Commercial License) . ... None . ... SAL Home | Computer Graphics, Images Signals | Misc . ... SAL@KachinaTech.COM . ...

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• SAL -- Scientific Applications on Linux -- New Items Added in 1998/09 and
• SAL- Computer Graphics, Images Signals - CAD, Drawing Painting Tools - CEDRAT's
• SAL- Parallel Computing - Programming Languages Systems - pC++

Электронная библиотека Попечительского совета . ... McEliece R.J. - Finite Fields for Computer Scientists and Engineers . ... Название: Finite Fields for Computer Scientists and Engineers . ... The theory of finite fields is of central importance in engineering and computer science, because of its applications to error-correcting codes, cryptography, spread-spectrum communications, and digital signal processing. ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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• Brown S.M. - Bioinformatics: A Biologist's Guide to Biocomputing and the
• Maeder R.E. - Computer science with mathematica :: Электронная библиотека
• Koffman E. - Problem Solving and Structured Programming in PASCAL ::

... Minimal size of Clud clusters (residues) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Hydrophobic cluster of a single protein structure is a separated pool of nonpolar atoms. Usually there is the biggest cluster in the protein called hydrophobic core. ... ConClus program is able to detect of conservative hydrophobic clusters for a family of related protein domains or just for a set of aligned proteins. ...

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... day commit -- a lot of changes fasta.py: universal save_fasta() determine_long_line -- for determine length of fasta sequence string in user input everywhere: standart long_line=60 -- 70 blocK. sequences _chains: returns sequences in order as in project added monomer pdb_secstr to store secondary structure pdb adding: some improvements and fixes fix in from_pdb_ chain : use all peptides, not only first ... 22 * self.positions -- sorted list of positions of the project.alignment that . ...

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• allpy: 32808e442d93
• allpy: lib/block.py annotate
• allpy: d9e971fa4699

... The RPS-BLAST database must be prepared again for the small-endian system. ... Primary preprocessing Prepare the following files : i. a collection of PSI- BLAST -generated profiles with arbitrary names and suffix .chk; ii. a collection of profile master sequences , associated with the profiles , each in a separate file with arbitrary name and a 3 character suffix starting with c; the sequences can have deflines; they need not be sequences in nr or in any other sequence ...

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• http://kodomo.cmm.msu.su/FBB/year_04/doc/term2/help_pattern.doc
• http://kodomo.cmm.msu.su/FBB/year_04/doc/BLAST_help/impala.html

... A problem of synthesis of nano-optical elements for the formation of dynamic images" . Goncharsky A.A., Durlevich S.R. The inverse problems of synthesis of nano-optical elements for the formation of dynamic images that change their position as the flat optical element is tilted are considered. The inverse problem of computing the microrelief of nano-optical elements is solved in the framework of the Fresnel scalar wave model. ...

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• "A numerical algorithm and a computer system for the analysis of rheological
• "A lattice Boltzmann scheme for computing on unstructured meshes"
• "Application of parallel algorithms for solving the problem of fluid flow to

Lomonosov Moscow State University , Skobeltsyn Institute of Nuclear Physics . ... Links . ... CDFE => Links . ... Space Physics Online Data Services at MSU SINP . Japan Atomic Energy Research Institute Nuclear Data Center . Korean Atomic Energy Research Institute Nuclear Data Center . MacNuclide Nuclear Data Base Management System . ... Radiation Safety Information Computational Center , Oak Ridge National Laboratory . ... Los Alamos National Laboratory Nuclear Data Viewer . ...

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• CDFE - Centre for Photonuclear Experiments Data - Home page
• CDFE => Online Services => Relational ENSDF

The Chair of Mathematical Theory of Intelligent Systems and . ... Research . ... development of the Automatic solver of mathematical problems . ... development of general methods of hierarchical expert systems design and computer solvers of problems ; . ... the theory of expert systems synthesis and computer solvers of problems is developed; the acting systems for the decision of mathematical problems and training to foreign languages are created which were demonstrated at International exhibitions; . ...

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• Intelligent Systems :: Research :: Search in Databases
• Intelligent Systems :: Research :: :: Articles
• Интеллектуальные системы :: Наука :: :: V international congress on

... Science . ... 3-d International Laser Graduate School "Modern Problems of Laser Physics LGS-2009 " . ... Main Science and education Scientific Laboratories Laboratory of computer simulations in optics . ... Dergachev Aleksandr Aleksandrovich engineer, Ph.D. Dormidonov Aleksandr Evgen'evich Ph.D. Kandidov Valeriy Petrovich professor, Doctor of science . ... Femtosecond Nonlinear Optics of High Power Laser Radiation . Femtosecond TW Laser Pulse Filamentation in Gases and Condensed Media . ...

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... Computer software has been developed for crystal chemistry analysis of arrangement of molecules in organic crystals on the basis of concepts worked out in the studies conducted by P.M.Zorky et al. ... The standard crystal chemistry analysis includes: . ... Constructing various graphic representations of the crystal structure and of its fragments, which clearly demonstrate arrangement of molecules, in particular, constructing representations of the most close molecule-molecule contacts. ...

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• Computers in Moscow (Russia)

Contents] [Previous page] [Next page] Index] . This book describes how to use Dynamic HTML to incorporate style sheets, positioned content, and downloadable fonts in your web pages. ... Introducing Style Sheets . ... Style Sheets in Communicator . Using Cascading Style Sheets to Define Styles . ... Defining Style Sheets with the <STYLE> Tag . Defining Style Sheets in External Files . ... Combining Style Sheets . ... Style Sheets Ink Home Page . ... Positioning HTML Content Using Styles . ...

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• Explanations for solar physics computing page
• Computer shopping via Web
• Long description for example illustrating positioning with respect to a

Home . Database of structures of nucleic acid - protein complexes . ... List of complexes . Pfam families . SCOP families . Interaction classes . ... NPIDB . ... Information on SCOP and Pfam domains detected in protein chains is presented. ... Each family has its own web page with the list of entries that include domains of the family. ... List of SCOP domains occurred in DNA-protein and RNA-protein complexes is organized in tree-like form, according to the SCOP classification. ...

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... To remain stable, tmRNA associates with Small Protein B ( SmpB ). ... Chemical probing of tmRNA structure in ribosomal complexes blocked at different stages of trans-translation allowed us to follow the structural changes starting from early steps of tmRNA passage, with the TLD in tmRNA at the ribosomal E-site, up to the termination step of trans-translation. ... The details of the models are available at http://rnp.genebee.msu.ru/bin/view/Projects/TmrnaEnglish . ... tmrna_4.pdb . ...

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• TmrnaEnglish - Projects - TWiki

Microsymposium 38, MS015, 2003 (letter format) MARS: MOVEMENT OF GEOGRAPHICAL POLES AND DEFORMATION OF ITS SURFACE. ... The global analysis of the Earth linear structure elements has allowed to define the position of geographical poles in the different geochronological periods [3, 4]. ... It is the curves that unite sequences of geographical poles - poles of symmetry of faults in the global stress field fixed by faults on a surface of the mantle during its rotation around of the core. ...

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• http://selena.sai.msu.ru/Rod/Publications/ms40/21_Dolitsky_etal.pdf