... file . ... diff . ... file log . ... Allow user to specify gap characters when parsing alignment . ... line diff . ... 1.21 Sequence = cls. sequence _type 1.22 - not_gap = lambda (i, char): char != - 1.23 - no_ gaps = line .replace( - , ) 1.24 - sequence = Sequence (no_ gaps , name , description , source) 1.25 + not_gap = lambda (i, char): char not in gaps 1.26 + without_ gaps = util.remove_each( line , gaps ) 1.27 + sequence = Sequence (without_ gaps , name , ...

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... 5 def __init__ ( self , position , velocity , lifetime , mutated ): . ... 11 def check_collision ( self , bacteria , delta , bact_r ): . ... 33 def asexual ( self , bacteria , delta_t , radius , delta , bact_r , full_lifetime ): . ... 38 def sexual ( self , other , bacteria , delta_t , radius , delta , bact_r , full_lifetime ): . ... 41 def find_place_a ( self , bacteria , delta , bact_r ): #searches for place for children . ... 48 def find_place_s ( self , other , bacteria , delta , bact_r ): . ...

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The files containing information about Affymetrix microarrays were downloaded from the official Affymetrix site. ... Probe sequences were mapped to the genome using Blat. ... The hits found "probe alignment regions" were . ... We annotated each probe alignment region using the mRNA and EST alignments provided by UCSC, considering only . ... The textual part of the interface consists of probe information section, probe alignment section and transcription state . ... Each gene and each probe alignment . ...

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... Parsimony method . ... It is based on the following principle: the ancestral sequences (posed in nodes of a phylogenetic tree) should be such that the minimal required number of character replacements on the branches of the tree is less than for any other choice of sequences. ... If the preliminary character of the node is * , but the output character of its immediate ancestor is some letter (say, X ), and its set of possible characters contains X , then the output character of the node is also X . ...

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A.N. Belozersky Institute . Bioinformatics Portal . ... Russian EMBnet Node . ... AliBee - Multiple alignment Release 2.0 . ... Grants information . ... Our Institute is a scientific department of Moscow State University. ... Address: Belozersky Institute,Moscow State University,Leninskie Gory 1,Bldg. ... Information about our activities and EMBnet resources around the World is available here . Information about our educational activities with kids, children and teenagers is available here . ...

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The QGManager class provides one-dimensional geometry management. ... void  setBorder  ( int b )  . ... bool  add  ( QChain * destination, QChain * source, int stretch = 0 )  . bool  addWidget  ( QChain *, QWidget *, int stretch = 0 )  . bool  addSpacing  ( QChain *, int minSize, int stretch = 0, int maxSize = unlimited )  . bool  addBranch  ( QChain * destination, QChain * branch, int fromIndex, int toIndex )  . ... Widgets are organized in chains, which can be parallel or serial. ...

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... Siberian Lang . Minority languages of Siberia as our cultural heritage . ... The project ?Development of the web-site ?Minority languages of Siberia as our cultural heritage? (on the material of the languages of the basin Middle Yenisei and the Middle and the Upper Taz)? was realized at the Laboratory for Computational Lexicography, Research Computing Centre, Lomonosov Moscow State University, with financial support from Russian Foundation for the Humanities, grant 12-04-12049.љ ...

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