... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

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• SDPsite

... All contacts alignment . ... Blue background means a contact with backbone phosphate. ... HBond with major groove + contact through a molecule of water with backbone phosphate; . ... contacts through water molecules both with backbone phosphate and major groove; . ... HBond with major groove + contacts through water molecules both with backbone phosphate and major groove; . ... HBond with major groove + engagement in hydrophobic cluster + contact through a molecule of water with backbone phosphate; ...

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• ETS_water_bridges
• ETS sequence conservation
• ETS_3D_conservation

... Alternative core new atoms (%) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Geometrical core of a set of structures is a subset of alignment positions those atoms are disposed similarly in all structures. ... For any two positions included into geometrical core, the distances between CA atoms of those positions in all structures may differ not more than the value of the parameter "Distance spreading". ...

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GntR family of bacterial transcription factors and their binding motifs: structure and co-evolution I.A. Suvorova Institute for Information Transmission Problems RAS (the Kharkevich Institute), Bolshoi Karetny per. ... We have shown that for FadR, HutC, and YtrA subfamilies nucleotide and amino acid positions that likely determine binding specificity correspond well to those identified for the protein-DNA structure of FadR (E.coli) [1]. ... 2001) The FadR-DNA Complex. ...

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• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/172.pdf

... Minimal size of Clud clusters (residues) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Hydrophobic cluster of a single protein structure is a separated pool of nonpolar atoms. Usually there is the biggest cluster in the protein called hydrophobic core. ... ConClus program is able to detect of conservative hydrophobic clusters for a family of related protein domains or just for a set of aligned proteins. ...

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• Nhunt: program for nucleic acid sequence similarity search

The topic of a student research: Patterns recognition of Supersecondary structures Abstract The goal of this project to prove the hypothesis that proteins with identical supersecondary structure have common sequence patterns even if they belong to different protein families and have very low sequence similarities. ... Application of usually used methods of sequence alignment to find the conserved positions is not available here because of very low sequence similarity (less than 10%). ...

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• allpy: 675b402094be lib/block.py
• allpy: 45573ee48844
• allpy: lib/project.py diff

Международный учебно-научный лазерный центр МГУ им. М.В. Ломоносова . Главная . ... О МЛЦ МГУ . ... Кратко о МЛЦ МГУ . ... Буклет МЛЦ . ... Заявки до 25 октября 2015г. Семинар МЛЦ и кафедры . ... Главная О МЛЦ МГУ Контакты . ... Москва, Ленинские горы, пересечение . ... Россия, 119991, ГСП-1, Москва, Ленинские горы, 1, стр. ... 7(495)939-1225 / +7(495)939-3113 . ... Посмотреть схему расположения зданий МГУ на Ленинских горах. 2008 МЛЦ МГУ . ...

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• Contacts

... Faculty of Physics . M.V.Lomonosov Moscow State University . ... 2: Faculty of Economy, Faculty of Law, Faculty of Computer Sciences and Engineering, Department of Russian Language for Foreign Students, Library for Natural Sciences, Currency Exchange ; 5 -- Faculty of Biology, Faculty of Soil Science; 6 -- Faculty of Sociology; 7 --D.V.Skobeltsyn Research Institiute for Nuclear Physics ; 8 -- Nonlinear Optics Laboratory , International Laser Center ; 9 -- P.K.Sternberg ...

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• Faculty of Physics
• DEPARTMENT OF FOREIGN RELATIONS
• Title

Электронная библиотека Попечительского совета . ... Monna G. - h-platitude des Structures de contact . ... Название: h-platitude des Structures de contact . Автор: Monna G. Язык: . ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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• Blair D.E. - Contact Manifolds in Riemannian Geometry :: Электронная библиотека
• Geiges H. - Introduction to Contact Topology :: Электронная библиотека
• Bourne P.E., Weissig H. - Structural bioinformatics :: Электронная библиотека

... The pivotal role of the beta 7 strand in the intersubunit contacts of different human small heat shock proteins. ... It is concluded that the beta 7 strand participates in the intersubunit interaction of four human small heat shock proteins (alpha B-crystallin, HspB1, HspB6, HspB8) having different structure of beta2 strand of alpha-crystallin domain and different length and composition of variable N- and C-terminal tails. ...

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• Biochemistry Department of Moscow State University | Contacts

. Color Explanation . Red absolutely conservative a.a residues (i.e. 100% identity) . 80% identity . 60% identity . No color . Percentage of Conservative Residues within the Ligand Contact Area . 25/34 = 0.735 . Santesson Elly, 2004

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• Department of animal cell biochemistry - Staff and contacts
• Contact
• DNA-protein_contacts/Term3/2008

Sign in Register . ... Resources . ... Blog . 495) 3334-65-56 . info@ecfs.msu.ru . All contacts . ... Lomonosov Moscow State University . Eurasian Center . ... Home About Contacts . ... Contacts . The Department of land resources . Moscow, . ... Agrarian center of Moscow state University. Phone +7-495-939-3427 . Fax. +7-495-939-42-39 . e-mail: office@ecfs.msu.ru . web: http://ecfs.msu.ru . ...

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• The structure of the ECFS | ECFS
• The Department of land resources | ECFS
• About Eurasian Center for Food Security | ECFS

... Государственный Астрономический Институт имени П.К. Штернберга МГУ . ... Семинары ГАИШ . ... Виртуальная обсерватория . ... Студенческая Астрономическая обсерватория ГАИШ . ... Контакты . ... Государственный астрономический институт имени П.К. Штернберга . ... Университетский проспект. д. 13 . Государственный астрономический институт им.П.К.Штернберга МГУ . ... На метро: до станции "Университет", далее пешком вдоль проспекта Вернадского в сторону Центра или 3 остановки на 28-м троллейбусе. ...

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... If there's no significant multiple alignment , including the sequence, that you interest, then the secondary structure is built, using only the energy model (just the potential energy of the system is minimized), but very often such method will give unreliable results. ... It should be mentioned that by default, at alignment case, the RNA secondary structure will be predicted for the first sequence of the alignment. ... It is done through optimizing, not the real, but model energy of the structure. ...

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• Screening of pattern or alignment against PROTEIN databank

... Department . ... Contacts . ... The department offices are at the 6th and 7th floor in the Lomonosov MSU 2nd educational building (Faculty of Computational Mathematics and Cybernetics): 714 (scientific secretary of the department), 615a (head of the department), 666, 717. ... CMC Faculty at Google Maps and Yandex.Maps . ... Scientific secretary of the department, Assoc. ... Deparment of the Automation for Scientific Research (ANI) . ... 2008?2016 ASR Department , CMC Faculty , Lomonosov MSU . ...

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• Contact information

... phone: 8(903)741-93-09 . Semiotics . The Word and the Movie: The Semiotics and the Narrative Structure of Cinema-Text (seminar on movie studies, together with A.љA.љZubov) . From Ferdinand de Saussure to Umberto Eco: The Semiotic Approach to Text Analysis (indexed by Thompson Reuters Web of Science only) . ... 2010. ... Regional Flavor' and Guilty Feelings in Arundhati Roy's The God of Small Things . ...

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• 'Русский язык: исторические судьбы и современность' - III Международный
• Московское типологическое общество :: МГУ :: Филфак :: ОТиПЛ
• MSCL-3 | Contact

... Any - Head of the Department Deputy Head of the Department Scientific Secretary Secretary Professor Docent Senior Lecturer Assistant Professor Senior Researcher Researcher Junior Researcher . ... 119992 Moscow, GSP-1, Leninskie Gory, MSU, mechanics and mathematics department, OPU, Room 13-14 . ...

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• Gorshkov Aleksey Vyacheslavovich | Department: General Problems of Control.
• Andrei Vladimirovich Fursikov | Department: General Problems of Control.
• Mikhail Ilych Zelikin | Department: General Problems of Control. Faculty of

... Contacts . ... Contacts - Contacts . Detailed contact information for the site . ... Head of Department . 7(495)9391502 . 7(495)9390069 . ... Deputy Head of Department . 7(495)9392603 . ... 7(495)9391496 . ... Coordinator . ... Senio coordinator . ... Senior coordinator . ... Lomonosov Moscow State University . International Relations Office 2007-2008 ...

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... Shevchenko Vladislav Vladimirovich . ... Position: Head of Department of Lunar and Planetary Research, Sternberg State Astronomical Institute, Moscow University, Doctor of Physics and Mathematics. ... L. Johnson Space Center - Lunar and Planetary Institute. ... Sternberg State Astronomical Institute, Moscow University, Universitetsky 13, Moscow, 119899 , Russia, . ... V.I.Chikmachev, S.G.Pugacheva and V.V.Shevchenko, Sternberg State Astronomical Institute, Moscow University, Moscow, chik@sai.msu.ru ...

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• Department of Lunar and planetary research
• Mikhail V. Goryachev

... About choir . ... Contacts . Performance the Academic Choir of the Moscow State University in Crocus City Hall . ... Bishop Tikhon opened the choir of Moscow State University in Vienna . Choir of Moscow State University spoke at the Vienna branch of the United Nations . ... Phone: +7 (495) 939-1862,+7 (495) 939-3563 . Post address: . 119234, Moscow, Leninskiyeљgory, 1 . Cultural center MSU,љAcademic choir MSU . ... Address: љLeninskiyeљgory, 1, Cultural center MSU, . ...

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